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[190221_at] membrane glycoprotein

Description F07A5.3 /REP_DB=WormBase Gene ID /WP=CE05556 /TR=Q19140 /GB=CAA96619.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=membrane glycoprotein
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 42      6grp_total > 30      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 572
1 2 3 4 range
A 924.7
(3)
P 		722.6
(0.6)
P 		834.1
(1.9)
P 		415.4
(-3)
P 		509
B 987.4
(3)
P 		749.2
(0.3)
P 		915.6
(2.2)
P 		467.1
(-3)
P 		520
C 848.9
(1.7)
P 		941.8
(3)
P 		856.4
(1.8)
P 		499
(-3)
P 		443
avr 920.3
(3) 		804.5
(1.5) 		868.7
(2.3) 		460.5
(-3) 		460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 530
1 2 3 4 5 6 range
A 545.5
(-3)
P 		976.4
(3)
P 		949.7
(2.6)
P 		926.8
(2.3)
P 		638.2
(-1.7)
P 		795
(0.5)
P 		431
B 667
(-3)
P 		900.3
(0.4)
P 		1075.4
(3)
P 		752.7
(-1.7)
P 		689.2
(-2.7)
P 		764.9
(-1.6)
P 		408
C 779.1
(0.1)
P 		923.2
(2.2)
P 		974.6
(2.9)
P 		980.6
(3)
P 		563.7
(-3)
P 		812.3
(0.6)
P 		417
avr 663.9
(-2.5) 		933.3
(1.9) 		999.9
(3) 		886.7
(1.2) 		630.4
(-3) 		790.7
(-0.4) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 336.7
(3)
P 		156.9
(-0.9)
P 		218
(0.4)
P 		60.8
(-3)
P 		276
B 314.9
(3)
P 		185
(-0.6)
P 		212.2
(0.1)
P 		99.5
(-3)
P 		215
C 281
(2.5)
P 		270.8
(2.2)
P 		298.5
(3)
P 		84.1
(-3)
P 		214
avr 310.9
(3) 		204.2
(0.2) 		242.9
(1.2) 		81.5
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 100.6
(-3)
P 		347.2
(3)
P 		206.8
(-0.4)
P 		235.1
(0.3)
P 		192.6
(-0.8)
P 		193.5
(-0.7)
P 		247
B 232.1
(-1)
P 		299.7
(3)
P 		261.1
(0.7)
P 		199.4
(-3)
P 		280
(1.8)
P 		285.2
(2.1)
P 		100
C 288.8
(3)
P 		281.7
(2.6)
P 		248
(0.7)
P 		197.2
(-2.2)
P 		182.4
(-3)
P 		271.9
(2)
P 		106
avr 207.2
(-3) 		309.5
(3) 		238.6
(-1.2) 		210.6
(-2.8) 		218.3
(-2.3) 		250.2
(-0.5) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2250
Sequence Type Exemplar sequence
Representative Public ID F07A5.3 NCBI
Target Description F07A5.3 /REP_DB=WormBase Gene ID /WP=CE05556 /TR=Q19140 /GB=CAA96619.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=membrane glycoprotein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059680(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059680 NCBI Caenorhabditis elegans F07A5.3 (F07A5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000034795 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7362624:7365257:1 11/11 None
SNAP00000034783 ENSEMBL cdna:SNAP chromosome:CEL140:I:7362879:7365257:1 11/11 None
F07A5.3 ENSEMBL cdna:known chromosome:CEL140:I:7362621:7365303:1 gene:F07A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7362554-7365188(+) 100.0 100.0
Public Domain and Genome References
Gene Title membrane glycoprotein
Ensembl F07A5.3
Entrez Gene 184107 Entrez gene
SwissProt Q19140 EMBL-EBI
WormBase CE05556 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96619 Hypothetical protein F07A5.3 [Caenorhabditis elegans] ref|NP_492081.1| F07A5.3 [Caenorhabditis elegans] 0.0
blast CAE66601 Hypothetical protein CBG11926 [Caenorhabditis briggsae] 0.0
blast CAA88547 Hypothetical protein R07B1.3 [Caenorhabditis elegans] ref|NP_509651.1| R07B1.3 [Caenorhabditis elegans] sp|Q09606|YRN3_CAEEL Hypothetical protein R07B1.3 in chromosome X 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002159 EMBL-EBI CD36 antigen 1.0E-126
Pfam IPR002159 EMBL-EBI CD36 antigen 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492081.1 2 12-34,529-548
F07A5.3 2 12-34,529-548
GENEFINDER00000034795 2 12-34,529-548
SNAP00000034783 1 460-479
Sequence
Target Sequence 
>C. ELEGANS:190221_AT
catgcatgttgtgatggttccctatataatggaacataccttctaccacctggaatgttt
ccacttgtatgctatccaggaagacttcaaccaacaccatttgccgttgtttattctcct
cctcatttcctgttctctccagatgaagtacggactactgtagttggaatggctcccaat
aaaagcctacatgagccaatgatttattaccatgaaccttatagtggaacaacattaaaa
gttgtaaatcgtcttcaagtgaatatgccagtcattcgatctcatgatgttccaagtagt
caaaatatgccaaatgttatgattccactgttctggcaggatacatcaccgaaatatcac
caattcatttttaatgaagtatggctcggatttgtattagtgcctcgattgatgagggtt
ctacaatttgtggctcttggaattggccttcttctggtggcgattatagtttttcttcaa
ttaagaaaaggaaaaccgtctttgattagacctttgaaaacaagtttcttagaaacgaca
agtaattggttatcttcgacatcttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCATGTTGTGATGGTTCCCTAT 250 211 1180 Antisense
CATACCTTCTACCACCTGGAATGTT 36 215 1214 Antisense
GAATGTTTCCACTTGTATGCTATCC 499 331 1232 Antisense
GAAGACTTCAACCAACACCATTTGC 185 339 1259 Antisense
ACACCATTTGCCGTTGTTTATTCTC 363 109 1273 Antisense
CATTTCCTGTTCTCTCCAGATGAAG 355 215 1303 Antisense
AATATGCCAGTCATTCGATCTCATG 414 171 1441 Antisense
ATGATTCCACTGTTCTGGCAGGATA 370 47 1498 Antisense
GTGGCTCTTGGAATTGGCCTTCTTC 680 491 1609 Antisense
ATTGGCCTTCTTCTGGTGGCGATTA 289 3 1621 Antisense
AATTGGTTATCTTCGACATCTTCTT 309 179 1723 Antisense
Sequence Source Affymetrix Proprietary Database