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[190217_at] zinc finger protein

Description F31F4.12 /REP_DB=WormBase Gene ID /WP=CE17736 /TR=O17131 /GB=AAG24095.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 81      6grp_total > 33      4grp_total > 04      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 309.8
(-1.8)
P 		249.6
(-3)
P 		324.6
(-1.5)
P 		557.9
(3)
P 		308
B 357.1
(-0.6)
P 		286.3
(-1.7)
P 		195.3
(-3)
P 		605.8
(3)
P 		411
C 369.6
(-0.1)
P 		228.5
(-3)
P 		248.4
(-2.6)
P 		521.4
(3)
P 		293
avr 345.5
(-1.2) 		254.8
(-3) 		256.1
(-3) 		561.7
(3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 261.7
(2.7)
P 		212.8
(-1.3)
P 		256.7
(2.3)
P 		265.9
(3)
P 		235.7
(0.6)
P 		191.6
(-3)
P 		74
B 318
(3)
P 		229.7
(-1)
P 		213
(-1.8)
P 		199.4
(-2.4)
P 		263.5
(0.5)
P 		187.1
(-3)
P 		131
C 312
(1.9)
P 		293.9
(1)
P 		333.6
(3)
P 		227.3
(-2.4)
P 		215.9
(-3)
P 		259.1
(-0.8)
P 		118
avr 297.2
(3) 		245.5
(-0.7) 		267.8
(0.9) 		230.9
(-1.7) 		238.4
(-1.2) 		212.6
(-3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 112.8
(3)
P 		54.2
(-3)
P 		84.9
(0.1)
P 		81.7
(-0.2)
P 		59
B 113.9
(1.9)
P 		70.7
(-1.2)
P 		45.3
(-3)
P 		129.1
(3)
P 		84
C 122.4
(3)
P 		65.7
(-3)
P 		86.6
(-0.8)
P 		87.9
(-0.7)
P 		57
avr 116.4
(3) 		63.5
(-3) 		72.3
(-2) 		99.6
(1.1) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 48.2
(-2.7)
P 		75.7
(3)
P 		55.9
(-1.1)
P 		67.4
(1.3)
P 		71.1
(2)
P 		46.7
(-3)
P 		29
B 110.7
(3)
P 		76.4
(-0.5)
P 		51.7
(-3)
P 		52.8
(-2.9)
P 		107
(2.6)
P 		69.8
(-1.2)
P 		59
C 115.6
(3)
P 		89.7
(0.8)
P 		84.9
(0.4)
P 		45.7
(-3)
P 		69.8
(-0.9)
P 		86.8
(0.5)
P 		70
avr 91.5
(3) 		80.6
(1.2) 		64.2
(-1.5) 		55.3
(-3) 		82.6
(1.5) 		67.8
(-0.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15195
Sequence Type Exemplar sequence
Representative Public ID F31F4.12 NCBI
Target Description F31F4.12 /REP_DB=WormBase Gene ID /WP=CE17736 /TR=O17131 /GB=AAG24095.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070885 NCBI Caenorhabditis elegans F31F4.12 (F31F4.12) mRNA, complete cds. 11/11 None
SNAP00000012366 ENSEMBL cdna:SNAP chromosome:CEL140:V:665786:667324:-1 10/11 None
GENEFINDER00000012380 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:665931:671272:-1 9/11 None
F31F4.12 ENSEMBL cdna:known chromosome:CEL140:V:665782:667324:-1 gene:F31F4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029058 1/11 Cross Hyb Matching Probes None
NM_001029059 1/11 Cross Hyb Matching Probes None
SNAP00000030546 1/11 Cross Hyb Matching Probes None
Y39B6A.17a 1/11 Cross Hyb Matching Probes A 
Y39B6A.17b 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:665781-667324(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-180
Ensembl F31F4.12
Entrez Gene 185170 Entrez gene
SwissProt O17131 EMBL-EBI
WormBase CE17736 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503286 F31F4.12 [Caenorhabditis elegans] gb|AAG24095.1| Hypothetical protein F31F4.12 [Caenorhabditis elegans] 0.0
blast T32311 hypothetical protein F31F4.12 - Caenorhabditis elegans 0.0
blast T32311 hypothetical protein F31F4.12 - Caenorhabditis elegans 1.0E-165
blast NP_503286 F31F4.12 [Caenorhabditis elegans] gb|AAG24095.1| Hypothetical protein F31F4.12 [Caenorhabditis elegans] 1.0E-164
blast CAE56023 Hypothetical protein CBG23582 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.9E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012380 6 24-46,66-88,108-130,151-173,203-225,246-268
Sequence
Target Sequence 
>C. ELEGANS:190217_AT
ttgccacgtgcctgaatcactttgacgagttcaaaaagctagaaattccaatgcagctga
aactcctccaaaccatctggcatgtatggggccggctcgaaaaaatcacgtcaagtgcga
gatatcaaaaaacagtcgaaaattctaaactatcggaagttgtgtttcaaagcggttgga
ttgtggatgtgaaggacgtcgatatagattgcaattggttcagcaattttccgaatgaac
aagtcaaaaatttcatgcttcaaacttccacggacctgtttaatgtgatccaatatattc
atgatttggatccaaccgacgttgaactgacctacatgctggctcagttgtgctttcaat
atgcaggaaaccgacatcgaggggaaatccaggaagtctgcgagcaattccagaatgtgt
tgtcgaacgatcttcatgactattacctcaatgagatgcgtatgccgcggtattcaagga
ggatagccaaaatgatgcagattaataattatgtgcagagaaatattcgaaagggtcggg
aacggatggaagtgattcattgcctggggattttcaagctggagttttcgcacccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCACGTGCCTGAATCACTTTGA 178 701 587 Antisense
CTCCTCCAAACCATCTGGCATGTAT 383 235 649 Antisense
TGGCATGTATGGGGCCGGCTCGAAA 25 539 664 Antisense
CAAACTTCCACGGACCTGTTTAATG 504 191 847 Antisense
GGATCCAACCGACGTTGAACTGACC 9 513 894 Antisense
GTTGAACTGACCTACATGCTGGCTC 330 439 907 Antisense
ATGCTGGCTCAGTTGTGCTTTCAAT 71 43 922 Antisense
GAACGATCTTCATGACTATTACCTC 706 347 1011 Antisense
GAGATGCGTATGCCGCGGTATTCAA 195 395 1039 Antisense
GGAAGTGATTCATTGCCTGGGGATT 470 531 1134 Antisense
TTTCAAGCTGGAGTTTTCGCACCCG 294 673 1158 Antisense
Sequence Source Affymetrix Proprietary Database