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[190214_at] zinc finger protein

Description C27A12.2 /REP_DB=WormBase Gene ID /WP=CE08411 /TR=O01961 /GB=AAB93640.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_high_8_8 > 34      6grp_highest_nonorm > 91      6grp_total > 67      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 284.9
(3)
P 		190.5
(-1)
P 		144.8
(-3)
A 		192.3
(-1)
A 		140
B 247.6
(3)
P 		122.9
(-2.8)
A 		152.9
(-1.4)
A 		119.7
(-3)
P 		128
C 313.3
(3)
P 		122.9
(-3)
M 		133.7
(-2.7)
P 		158.8
(-1.9)
P 		190
avr 281.9
(3) 		145.4
(-2.9) 		143.8
(-3) 		156.9
(-2.4) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 182.4
(-3)
P 		316.2
(3)
P 		214.3
(-1.6)
P 		252.4
(0.1)
P 		182.8
(-3)
P 		314.7
(2.9)
P 		134
B 212.9
(-0.7)
P 		184.1
(-1.8)
P 		189.6
(-1.6)
P 		151.1
(-3)
P 		237.1
(0.2)
P 		313.4
(3)
P 		162
C 280.3
(0.6)
P 		220.9
(-2.3)
P 		207.2
(-3)
P 		208.6
(-2.9)
P 		210.2
(-2.9)
P 		329.5
(3)
P 		122
avr 225.2
(-1.9) 		240.4
(-1.1) 		203.7
(-3) 		204
(-3) 		210
(-2.7) 		319.2
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 103.7
(3)
P 		41.4
(-1.9)
P 		37.8
(-2.2)
A 		28.1
(-3)
A 		76
B 79
(3)
P 		30.3
(-2.5)
A 		35.4
(-1.9)
A 		25.5
(-3)
P 		54
C 103.7
(3)
P 		35.3
(-2.3)
M 		46.6
(-1.5)
P 		26.8
(-3)
P 		77
avr 95.5
(3) 		35.7
(-2.2) 		39.9
(-1.9) 		26.8
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 33.6
(-3)
P 		112.5
(3)
P 		46.7
(-2)
P 		64
(-0.7)
P 		55.2
(-1.4)
P 		76.6
(0.3)
P 		79
B 74.1
(-0.3)
P 		61.3
(-1.3)
P 		46
(-2.5)
P 		40
(-3)
P 		96.3
(1.4)
P 		116.9
(3)
P 		77
C 103.9
(2.4)
P 		67.4
(-0.8)
P 		52.7
(-2.1)
P 		41.9
(-3)
P 		68
(-0.7)
P 		110.3
(3)
P 		68
avr 70.5
(-0.5) 		80.4
(0.6) 		48.5
(-3) 		48.6
(-3) 		73.2
(-0.2) 		101.3
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2067
Sequence Type Exemplar sequence
Representative Public ID C27A12.2 NCBI
Target Description C27A12.2 /REP_DB=WormBase Gene ID /WP=CE08411 /TR=O01961 /GB=AAB93640.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059344 NCBI Caenorhabditis elegans C27A12.2 (C27A12.2) mRNA, complete cds. 11/11 None
SNAP00000016769 ENSEMBL cdna:SNAP chromosome:CEL140:I:6049809:6053996:1 11/11 None
GENEFINDER00000016779 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6049809:6053996:1 11/11 None
C27A12.2 ENSEMBL cdna:known chromosome:CEL140:I:6049805:6054144:1 gene:C27A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6049808-6053996(+) 97.55 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl C27A12.2
Entrez Gene 172281 Entrez gene
SwissProt O01961 EMBL-EBI
WormBase CE08411 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB93640 Hypothetical protein C27A12.2 [Caenorhabditis elegans] ref|NP_491745.1| C27A12.2 [Caenorhabditis elegans] 0.0
blast CAE74377 Hypothetical protein CBG22103 [Caenorhabditis briggsae] 1.0E-151
blast CAE74377 Hypothetical protein CBG22103 [Caenorhabditis briggsae] 1.0E-150
blast CAE74377 Hypothetical protein CBG22103 [Caenorhabditis briggsae] 1.0E-139
blast P52742 Zinc finger protein 135 gb|AAC50254.1| zinc finger protein ZNF135 8.0E-24
blast XP_541674 PREDICTED: similar to zinc finger protein 91 (HPF7, HTF10) isoform 1 [Canis familiaris] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:190214_AT
gatgctgttgctaagggcgtagacgtaagcgaagcgagcccccatcatcgtaaaaagcca
acactgcacaaatgtgagtactgtggccgagtggacaagtatccgagcaagattcgtgct
cacatgagaactcacaccggcgagaaaccattcaaatgtgaaatctgtggaatggcattc
tcacagaagactccaatgagattacatttacgtcgacatttcgatcagaaaccatatgaa
tgtgatgttgatggatgcaaggaacgatttgtcagtggagctatactcaaaatgcatgtt
gagaagaaacatttgaataagaaaaaatatgtgtgttctcgtggatgtggccgagtcttt
tcaagtgcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTGTTGCTAAGGGCGTAGACG 678 413 1297 Antisense
CGTAGACGTAAGCGAAGCGAGCCCC 592 1 1314 Antisense
GAGCCCCCATCATCGTAAAAAGCCA 442 385 1332 Antisense
GTGAGTACTGTGGCCGAGTGGACAA 429 483 1370 Antisense
GATTCGTGCTCACATGAGAACTCAC 252 433 1407 Antisense
GAACTCACACCGGCGAGAAACCATT 273 349 1424 Antisense
ATGGCATTCTCACAGAAGACTCCAA 109 53 1468 Antisense
GATTACATTTACGTCGACATTTCGA 477 425 1496 Antisense
GAACGATTTGTCAGTGGAGCTATAC 493 347 1558 Antisense
GTGTTCTCGTGGATGTGGCCGAGTC 409 485 1629 Antisense
GTGGCCGAGTCTTTTCAAGTGCATA 28 493 1643 Antisense
Sequence Source Affymetrix Proprietary Database