[Home] | [Total List]

[190213_s_at] peroxidase precursor

Description C16C8.2 /REP_DB=WormBase Gene ID /WP=CE23553 /TR=P91060 /GB=AAK68180.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase precursor
Cluster 6grp_total > 93      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 833
1 2 3 4 range
A 3.6
(-3)
A 		741.7
(3)
P 		735.1
(2.9)
P 		5.5
(-3)
A 		738
B 5.4
(-3)
A 		836.6
(3)
P 		737.3
(2.3)
P 		7.6
(-3)
A 		831
C 5.3
(-3)
A 		802
(3)
P 		793.5
(2.9)
P 		7.8
(-3)
A 		797
avr 4.8
(-3) 		793.4
(3) 		755.3
(2.7) 		7
(-3) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1791
1 2 3 4 5 6 range
A 23
(-3)
A 		403.3
(-1.3)
P 		207
(-2.2)
P 		743.8
(0.2)
P 		1365.1
(3)
P 		201.3
(-2.2)
P 		1342
B 24
(-3)
A 		293.3
(-1.7)
P 		303.2
(-1.7)
P 		741.9
(0.4)
P 		1301.5
(3)
P 		175.6
(-2.3)
P 		1278
C 68.2
(-3)
A 		325.3
(-2.1)
P 		303.3
(-2.2)
P 		710
(-0.8)
P 		1813.8
(3)
P 		169
(-2.7)
P 		1746
avr 38.4
(-3) 		340.6
(-1.8) 		271.2
(-2) 		731.9
(-0.1) 		1493.5
(3) 		182
(-2.4) 		1455
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 1.3
(-3)
A 		161
(2)
P 		192.2
(3)
P 		0.8
(-3)
A 		191
B 1.7
(-3)
A 		206.6
(3)
P 		170.8
(2)
P 		1.6
(-3)
A 		205
C 1.8
(-3)
A 		230.6
(2)
P 		276.6
(3)
P 		1.3
(-3)
A 		275
avr 1.6
(-3) 		199.4
(2.6) 		213.2
(3) 		1.2
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 583
1 2 3 4 5 6 range
A 4.2
(-3)
A 		143.4
(-1)
P 		45.1
(-2.4)
P 		188.6
(-0.3)
P 		411.9
(3)
P 		49
(-2.3)
P 		408
B 8.4
(-3)
A 		97.6
(-2)
P 		73.6
(-2.2)
P 		196.5
(-0.8)
P 		528.8
(3)
P 		65.5
(-2.3)
P 		520
C 25.3
(-3)
A 		99.3
(-2.2)
P 		77.2
(-2.4)
P 		142.8
(-1.7)
P 		586.9
(3)
P 		56.6
(-2.7)
P 		562
avr 12.6
(-3) 		113.4
(-1.8) 		65.3
(-2.4) 		176
(-1) 		509.2
(3) 		57
(-2.5) 		497
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190213_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5284
Sequence Type Exemplar sequence
Representative Public ID C16C8.2 NCBI
Target Description C16C8.2 /REP_DB=WormBase Gene ID /WP=CE23553 /TR=P91060 /GB=AAK68180.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062139 NCBI Caenorhabditis elegans C16C8.2 (C16C8.2) mRNA, complete cds. 11/11 None
SNAP00000014771 ENSEMBL cdna:SNAP chromosome:CEL140:II:3431929:3435184:-1 10/11 None
GENEFINDER00000014808 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3431570:3439487:-1 11/11 None
C16C8.2 ENSEMBL cdna:known chromosome:CEL140:II:3431300:3436507:-1 gene:C16C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3431568-3436453(-) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase precursor
Ensembl C16C8.2
Entrez Gene 173686 Entrez gene
SwissProt P91060 EMBL-EBI
WormBase CE23553 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68180 Hypothetical protein C16C8.2 [Caenorhabditis elegans] ref|NP_494540.1| C16C8.2 [Caenorhabditis elegans] 0.0
blast T29407 hypothetical protein C16C8.2 - Caenorhabditis elegans 0.0
blast CAE70957 Hypothetical protein CBG17768 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.8E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.6E-13
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.8E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.6E-13
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.8E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.6E-13
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190213_S_AT
atcgacccgctgattcgtggattgatgacgcttccggccaagatgccacagcgattgaca
ccggctgtcactgagagaatcttcggaaactctgatcttggatcaatcaatattcagaga
ggaagagatcacggagttccaccatacaccgtctggcggaagttctgcggtctcccagag
gttaaggattttgagggcttgaagcaagtgatcagcaatcaagttgtcattgacaatctt
aaagttgtctacaaacacgttgatgccatcgatatgtacgttggaagtttgctggaggat
cctgtgaaggacgccttggtcggaccaacactgtcttgcatcattggagagcagttcaag
agaacgagaaatggagatcgattgtggtacgagaactccaaagtgttcagcccagagcag
ctgcttcaaatcaaaaagatcacaatgtcccgagtgctttgcgatgctggagagcacttc
ccaatggtgccgcgcaaggctttctctgtgttcaagccgacagcgcataatcttgtcaaa
tgcgacgagatcccagacctggactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACCCGCTGATTCGTGGATTGA 257 37 1606 Antisense
GATGCCACAGCGATTGACACCGGCT 468 415 1647 Antisense
GACACCGGCTGTCACTGAGAGAATC 559 367 1662 Antisense
ACACCGTCTGGCGGAAGTTCTGCGG 531 109 1751 Antisense
TGTGAAGGACGCCTTGGTCGGACCA 99 555 1908 Antisense
TGTTCAGCCCAGAGCAGCTGCTTCA 40 561 2009 Antisense
TCACAATGTCCCGAGTGCTTTGCGA 660 627 2045 Antisense
GATGCTGGAGAGCACTTCCCAATGG 701 413 2068 Antisense
CGCAAGGCTTTCTCTGTGTTCAAGC 573 253 2098 Antisense
GTGTTCAAGCCGACAGCGCATAATC 599 485 2113 Antisense
CGACGAGATCCCAGACCTGGACTAC 91 205 2148 Antisense
Sequence Source Affymetrix Proprietary Database