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[190212_s_at] Rat trg gene product

Description F46H5.4 /REP_DB=WormBase Gene ID /WP=CE04590 /TR=Q20487 /GB=AAB37023.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Rat trg gene product
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 55      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 507.9
(3)
P 		419.6
(-0.4)
P 		366
(-2.5)
P 		353.6
(-3)
P 		154
B 591.7
(3)
P 		381.7
(-2.1)
P 		424.9
(-1)
P 		343.4
(-3)
P 		248
C 578.7
(3)
P 		354.7
(-3)
P 		417.2
(-1.3)
P 		354.9
(-3)
P 		224
avr 559.4
(3) 		385.3
(-2) 		402.7
(-1.5) 		350.6
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 460.7
(-0.1)
P 		672.2
(3)
P 		257.7
(-3)
P 		536.7
(1)
P 		360.1
(-1.5)
P 		449.4
(-0.2)
P 		415
B 441.9
(3)
P 		387.6
(1.2)
P 		296
(-1.9)
P 		370.1
(0.6)
P 		264.3
(-3)
P 		305
(-1.6)
P 		178
C 442.1
(3)
P 		425.2
(2.3)
P 		440.9
(3)
P 		407.1
(1.6)
P 		428.3
(2.5)
P 		289.4
(-3)
P 		153
avr 448.2
(1.3) 		495
(3) 		331.5
(-3) 		438
(0.9) 		350.9
(-2.3) 		347.9
(-2.4) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 184.9
(3)
P 		91.1
(-1.2)
P 		95.7
(-1)
P 		51.8
(-3)
P 		133
B 188.7
(3)
P 		94.3
(-1.9)
P 		98.5
(-1.7)
P 		73.2
(-3)
P 		116
C 191.6
(3)
P 		102
(-1.1)
P 		145.4
(0.9)
P 		59.8
(-3)
P 		132
avr 188.4
(3) 		95.8
(-1.4) 		113.2
(-0.6) 		61.6
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 84.9
(-2.1)
P 		239.1
(3)
P 		56.1
(-3)
P 		136.1
(-0.4)
P 		108.7
(-1.3)
P 		109.4
(-1.3)
P 		183
B 153.8
(3)
P 		129
(1.2)
P 		71.9
(-3)
P 		98
(-1.1)
P 		107.4
(-0.4)
P 		113.7
(0.1)
P 		82
C 163.9
(3)
P 		129.7
(0.5)
P 		112.2
(-0.8)
P 		81.9
(-3)
P 		138.6
(1.1)
P 		96.9
(-1.9)
P 		82
avr 134.2
(0.8) 		165.9
(3) 		80.1
(-3) 		105.3
(-1.2) 		118.2
(-0.3) 		106.7
(-1.1) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190212_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16474
Sequence Type Exemplar sequence
Representative Public ID F46H5.4 NCBI
Target Description F46H5.4 /REP_DB=WormBase Gene ID /WP=CE04590 /TR=Q20487 /GB=AAB37023.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Rat trg gene product
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076818 NCBI Caenorhabditis elegans F46H5.4 (F46H5.4) mRNA, complete cds. 11/11 None
SNAP00000013754 ENSEMBL cdna:SNAP chromosome:CEL140:X:7245366:7254539:-1 11/11 None
GENEFINDER00000013764 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7245366:7256924:-1 11/11 None
F46H5.4 ENSEMBL cdna:known chromosome:CEL140:X:7245025:7254509:-1 gene:F46H5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7245364-7254508(-) 100.0 100.0
Public Domain and Genome References
Gene Title Rat trg gene product
Ensembl F46H5.4
Entrez Gene 180988 Entrez gene
SwissProt Q20487 EMBL-EBI
WormBase CE04590 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604248_AT similar to dedicator of cytokinesis 7 cfa
CANINE_2:CFAAFFX.28689.1.S1_S_AT similar to dedicator of cytokinesis 7 cfa
CANINE_2:CFAAFFX.28727.1.S1_AT similar to dedicator of cytokinesis 7 cfa
DROSOPHILA_2:1637327_AT dm
DROSGENOME1:153716_AT dm
CHICKEN:GGA.10738.1.S1_S_AT dedicator of cytokinesis 7 gga
CHICKEN:GGA.16877.1.S1_S_AT dedicator of cytokinesis 7 gga
CHICKEN:GGA.3049.1.S1_AT dedicator of cytokinesis 7 gga
CHICKEN:GGA.3049.2.S1_S_AT dedicator of cytokinesis 7 gga
CHICKEN:GGAAFFX.23401.4.S1_S_AT dedicator of cytokinesis 7 gga
CHICKEN:GGAAFFX.23401.5.S1_AT dedicator of cytokinesis 7 gga
CHICKEN:GGAAFFX.23401.5.S1_S_AT dedicator of cytokinesis 7 gga
HU35KSUBB:RC_F09299_AT dedicator of cytokinesis 7 hs
HU35KSUBC:RC_N57773_AT dedicator of cytokinesis 7 hs
HU35KSUBD:RC_R38919_I_AT dedicator of cytokinesis 7 hs
U133_X3P:HS.93560.0.S1_3P_AT dedicator of cytokinesis 7 hs
U133_X3P:HS.22869.0.A1_3P_AT dedicator of cytokinesis 7 hs
HG-U133_PLUS_2:225384_AT dedicator of cytokinesis 7 hs
HG-U133B:225384_AT dedicator of cytokinesis 7 hs
HG-U133_PLUS_2:237470_AT dedicator of cytokinesis 7 hs
HG-U133B:237470_AT dedicator of cytokinesis 7 hs
HG-U95C:48708_AT dedicator of cytokinesis 7 hs
HG-U95B:49128_I_AT dedicator of cytokinesis 7 hs
HG-U95B:49129_R_AT dedicator of cytokinesis 7 hs
HG-U133_PLUS_2:242611_AT Dedicator of cytokinesis 7 hs
HG-U133B:242611_AT Dedicator of cytokinesis 7 hs
U133_X3P:HS.244818.0.A1_3P_AT Dedicator of cytokinesis 7 hs
MOUSE430_2:1425315_AT dedicator of cytokinesis 7 mm
MOUSE430A_2:1425315_AT dedicator of cytokinesis 7 mm
MOE430A:1425315_AT dedicator of cytokinesis 7 mm
MG-U74AV2:103356_AT dedicator of cytokinesis 7 mm
MOE430A:1448892_AT dedicator of cytokinesis 7 mm
MOUSE430A_2:1448892_AT dedicator of cytokinesis 7 mm
MOUSE430_2:1448892_AT dedicator of cytokinesis 7 mm
MU19KSUBB:TC30987_AT Dedicator of cytokinesis 7, mRNA (cDNA clone MGC:38636 IMAGE:5355798) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37023 Hypothetical protein F46H5.4 [Caenorhabditis elegans] ref|NP_509219.1| F46H5.4 [Caenorhabditis elegans] 0.0
blast CAE65862 Hypothetical protein CBG11005 [Caenorhabditis briggsae] 0.0
blast NP_212132 dedicator of cytokinesis 7 [Homo sapiens] emb|CAI13104.1| dedicator of cytokinesis 7 [Homo sapiens] emb|CAI22995.1| dedicator of cytokinesis 7 [Homo sapiens] 0.0
blast AAT94502 LD20667p [Drosophila melanogaster] gb|AAF51561.2| CG11376-PA [Drosophila melanogaster] ref|NP_608489.2| CG11376-PA [Drosophila melanogaster] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010703 EMBL-EBI Dedicator of cytokinesis 7.5E-114
Pfam IPR010703 EMBL-EBI Dedicator of cytokinesis 7.5E-114
Pfam IPR010703 EMBL-EBI Dedicator of cytokinesis 7.5E-114
Sequence
Target Sequence 
>C. ELEGANS:190212_S_AT
acagattctacttcgaagctccgtacacaatggaaggtcgagcgcagggagagctggccg
cgcagtacaaaaagcgtactattttgacagtagaaaactcgttcccctacatcaaaacgc
gccttcaagttgtgaaccgaagtgtgaaagatttttcaccaatcgaagtggcaattgaag
acattgaaaaaaagacgcgagaactctcagcagccgcacagcacaaaaatccaaaaatgt
tgtcaatgttcattcaaggttccattggaacgacagtaaaccagggcccacttgagattg
ccaatgtgttcctagccaacgcaatgcttgatgatcgtggtcgacccgtggatcgtcttc
agaacaagctccgtctgtcttttcggcatttgcaatgtaaagcaatggaagctattgagc
tttgtcgtcaattaatcggggaagatcagaaggagtatcaaagaaatgttgaggaaaact
ttgagagtttcgtgacccacctgaagccaatgctatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGATTCTACTTCGAAGCTCCGTA 18 109 5498 Antisense
GAGCTGGCCGCGCAGTACAAAAAGC 437 387 5548 Antisense
AACGCGCCTTCAAGTTGTGAACCGA 433 143 5613 Antisense
AAAGACGCGAGAACTCTCAGCAGCC 470 123 5688 Antisense
AGCAGCCGCACAGCACAAAAATCCA 599 77 5706 Antisense
TAAACCAGGGCCCACTTGAGATTGC 269 639 5774 Antisense
GATTGCCAATGTGTTCCTAGCCAAC 443 431 5793 Antisense
GGATCGTCTTCAGAACAAGCTCCGT 110 513 5847 Antisense
TCCGTCTGTCTTTTCGGCATTTGCA 398 595 5867 Antisense
TTTGAGAGTTTCGTGACCCACCTGA 251 667 5977 Antisense
ACCCACCTGAAGCCAATGCTATCTA 545 87 5992 Antisense
Sequence Source Affymetrix Proprietary Database