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[190210_at]

Description C07A12.5 /REP_DB=WormBase Gene ID /WP=CE03973 /TR=Q17768 /GB=AAK39153.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 74      4grp_total > 16      6grp_cgc > 66      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 18.3
(-3)
A 		42.4
(-2.1)
A 		86.9
(-0.5)
A 		182.4
(3)
A 		164
B 28.7
(-3)
A 		73.9
(-0.9)
A 		138.9
(2.1)
A 		157.2
(3)
A 		129
C 54.4
(-3)
A 		70.6
(-2.3)
A 		61.7
(-2.7)
A 		201.7
(3)
A 		147
avr 33.8
(-3) 		62.3
(-1.8) 		95.8
(-0.5) 		180.4
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 24
(-3)
A 		48.1
(-1.5)
A 		109.4
(2.3)
A 		89.8
(1.1)
A 		120.2
(3)
A 		118.7
(2.9)
A 		96
B 38.1
(-3)
A 		113
(0.8)
A 		139.9
(2.1)
A 		97
(-0)
A 		116.9
(1)
A 		157.7
(3)
A 		120
C 31.3
(-3)
A 		131.1
(3)
A 		98.4
(1)
A 		122
(2.5)
A 		72.5
(-0.5)
A 		124.1
(2.6)
A 		100
avr 31.1
(-3) 		97.4
(0.9) 		115.9
(2) 		102.9
(1.2) 		103.2
(1.2) 		133.5
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 6.7
(-3)
A 		9.2
(-2.3)
A 		22.7
(1.8)
A 		26.7
(3)
A 		20
B 9.2
(-3)
A 		18.3
(-0.8)
A 		32.2
(2.7)
A 		33.5
(3)
A 		24
C 18
(-3)
A 		20.3
(-2.1)
A 		21.5
(-1.7)
A 		34
(3)
A 		16
avr 11.3
(-3) 		15.9
(-1.6) 		25.5
(1.2) 		31.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 4.4
(-3)
A 		17.1
(-0.6)
A 		23.8
(0.6)
A 		22.8
(0.5)
A 		36.3
(3)
A 		28.9
(1.6)
A 		32
B 13.3
(-3)
A 		37.6
(0.2)
A 		34
(-0.3)
A 		25.7
(-1.4)
A 		47.5
(1.5)
A 		58.8
(3)
A 		46
C 11.6
(-3)
A 		40
(2.7)
A 		25
(-0.3)
A 		24.5
(-0.4)
A 		23.5
(-0.6)
A 		41.5
(3)
A 		30
avr 9.8
(-3) 		31.6
(0.9) 		27.6
(0.2) 		24.3
(-0.4) 		35.8
(1.7) 		43.1
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17244
Sequence Type Exemplar sequence
Representative Public ID C07A12.5 NCBI
Target Description C07A12.5 /REP_DB=WormBase Gene ID /WP=CE03973 /TR=Q17768 /GB=AAK39153.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029196(11), NM_001029197(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029196 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-3) (spr-3) mRNA, complete cds. 11/11 None
NM_001029197 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-3) (spr-3) mRNA, complete cds. 10/11 None
SNAP00000032343 ENSEMBL cdna:SNAP chromosome:CEL140:X:4514078:4516423:1 11/11 None
GENEFINDER00000032351 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4514078:4516777:1 11/11 None
C07A12.5b ENSEMBL cdna:known chromosome:CEL140:X:4514078:4516864:1 gene:C07A12.5 10/11 A 
C07A12.5a ENSEMBL cdna:known chromosome:CEL140:X:4514078:4516864:1 gene:C07A12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4513847-4516424(+) 98.89 99.87
Public Domain and Genome References
Ensembl C07A12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR30211 Suppressor of presenilin defect protein 3, isoform a [Caenorhabditis elegans] ref|NP_001024367.1| Suppressor of PResenilin defect family member (spr-3) [Caenorhabditis elegans] sp|Q17768|SPR3_CAEEL Suppressor of presenilin protein 0.0
blast T34090 hypothetical protein C07A12.5 - Caenorhabditis elegans 0.0
blast AAR30212 Suppressor of presenilin defect protein 3, isoform b [Caenorhabditis elegans] ref|NP_001024368.1| Suppressor of PResenilin defect family member (spr-3) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190210_AT
aacgtcttcagatcaattccaacaatccgtgaaagttccaaagtacgaagactttttgaa
catgaagccagttatgccatatttccaaaaacaacgacatccactggaagcgattgctat
gtacgaaaaggcaaaaagggaatacgaaaagaatcactgtttcccgaatcttccaatttt
cgaattcaacattgagtacaagaacttgcatccactcgccaaggcacagtatgggaaaaa
caatatgaaagagtattttttgaatgaaatggaagtagagagtaagttaacgagtcttca
acgaaaatctcgcgaatgcactgactgcccattcaaacacaacgatctgcagcagttccg
tctccaccgtgacaagcatttctacggtggatcacacacctgtccggagtgcaactattc
atcgaacaaccataatcaagtggtcgagcacacgtttgtggatcactatttgagcgatgt
gagattggttgaagggcttccgtcttcggattcggaggacgataatattccggtacctcc
tgatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTCTTCAGATCAATTCCAACAA 116 145 1665 Antisense
AAGAATCACTGTTTCCCGAATCTTC 143 153 1813 Antisense
CATCCACTCGCCAAGGCACAGTATG 177 211 1873 Antisense
AAATCTCGCGAATGCACTGACTGCC 457 117 1969 Antisense
GACTGCCCATTCAAACACAACGATC 484 375 1987 Antisense
CAACGATCTGCAGCAGTTCCGTCTC 638 187 2004 Antisense
GTCTCCACCGTGACAAGCATTTCTA 537 469 2024 Antisense
CTACGGTGGATCACACACCTGTCCG 463 223 2046 Antisense
ACCTGTCCGGAGTGCAACTATTCAT 585 87 2062 Antisense
TTGAAGGGCTTCCGTCTTCGGATTC 16 631 2153 Antisense
TAATATTCCGGTACCTCCTGATACT 304 635 2187 Antisense
Sequence Source Affymetrix Proprietary Database