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[190207_at] zinc finger protein

Description C49D10.2 /REP_DB=WormBase Gene ID /WP=CE08843 /TR=O16609 /GB=AAC71177.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 08      4grp_total > 19      6grp_cgc > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 24.7
(-1.6)
A 		47.1
(-0)
A 		3.9
(-3)
A 		91.1
(3)
A 		87
B 5.7
(-3)
A 		8
(0.1)
A 		7.9
(0)
A 		10.1
(3)
A 		4
C 24.8
(-1.6)
A 		38.9
(-0.6)
A 		3.7
(-3)
A 		91.7
(3)
A 		88
avr 18.4
(-1.7) 		31.3
(-0.4) 		5.2
(-3) 		64.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 109.2
(3)
A 		6.6
(-3)
A 		30.5
(-1.6)
A 		30.4
(-1.6)
A 		11
(-2.7)
A 		41.5
(-1)
A 		103
B 17.4
(-1.3)
A 		21.6
(-0.6)
A 		9.5
(-2.5)
A 		45.2
(3)
A 		6
(-3)
A 		37.5
(1.8)
A 		39
C 29
(0.8)
A 		35.7
(1.7)
A 		43.1
(2.8)
A 		44.3
(3)
A 		3.5
(-3)
A 		8.5
(-2.3)
A 		41
avr 51.9
(3) 		21.3
(-1.1) 		27.7
(-0.2) 		40
(1.4) 		6.8
(-3) 		29.2
(-0) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9
(0.9)
A 		10.2
(1.5)
A 		1
(-3)
A 		13.3
(3)
A 		12
B 1.8
(-3)
A 		2
(-0)
A 		1.8
(-3)
A 		2.2
(3)
A 		0
C 8.2
(-0.1)
A 		11.2
(1.2)
A 		1.3
(-3)
A 		15.5
(3)
A 		14
avr 6.3
(0.3) 		7.8
(1.3) 		1.4
(-3) 		10.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 20.1
(3)
A 		2.3
(-3)
A 		6.6
(-1.6)
A 		7.7
(-1.2)
A 		3.3
(-2.7)
A 		10.1
(-0.4)
A 		18
B 6.1
(-1.1)
A 		7.2
(-0.5)
A 		2.3
(-3)
A 		12
(2)
A 		2.4
(-2.9)
A 		14
(3)
A 		12
C 10.8
(2.9)
A 		10.9
(2.9)
A 		11
(3)
A 		8.9
(1.7)
A 		1.1
(-3)
A 		2.9
(-1.9)
A 		10
avr 12.3
(3) 		6.8
(-0.3) 		6.6
(-0.4) 		9.5
(1.3) 		2.3
(-3) 		9
(1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4041
Sequence Type Exemplar sequence
Representative Public ID C49D10.2 NCBI
Target Description C49D10.2 /REP_DB=WormBase Gene ID /WP=CE08843 /TR=O16609 /GB=AAC71177.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062281 NCBI Caenorhabditis elegans C49D10.2 (C49D10.2) mRNA, complete cds. 11/11 None
SNAP00000008445 ENSEMBL cdna:SNAP chromosome:CEL140:II:3880238:3882092:1 11/11 None
C49D10.2 ENSEMBL cdna:known chromosome:CEL140:II:3880238:3882092:1 gene:C49D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3880236-3882091(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-166
Ensembl C49D10.2
Entrez Gene 183605 Entrez gene
SwissProt O16609 EMBL-EBI
WormBase CE08843 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71177 Hypothetical protein C49D10.2 [Caenorhabditis elegans] ref|NP_494682.1| C49D10.2 [Caenorhabditis elegans] 0.0
blast AAC24282 Nuclear hormone receptor family protein 124 [Caenorhabditis elegans] gb|AAR11982.1| nuclear receptor NHR-124 [Caenorhabditis elegans] ref|NP_504070.2| Nuclear Hormone Receptor family member (nhr-124) [Caenorhabditis elegans] 2.0E-95
blast CAE56145 Hypothetical protein CBG23758 [Caenorhabditis briggsae] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.8E-44
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:190207_AT
gaattcttctcctggaaaccgtcactctgaaaagtttccatctctccgttgccttcgatt
cattctcgcagaaaaaggaaaaaatattggcgcccgatgggtcggaaatgtttccagact
cgcttaacaaaatggacttttgtaaggatctaattatgagattattgacaacaccagtta
agccgttgattgcaatgaaattgactgaaacggagtacctgctgctgggcatcattgtga
tctgtaatccagaaatcgacggcctatccccctcgggaaaagcgataatcaccgcattcc
tccaaaaaactattaatgttcttctccagttctgcctcatcaacaatcctagatctgctc
ctagtcgacttttagagataatttctatcaatcagatcctgaatcggcagttccacgcaa
gctacaagctatttgatgctctgcggaaacaatgggacccgacaatgagcttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTTCTCCTGGAAACCGTCAC 148 323 581 Antisense
TTGCCTTCGATTCATTCTCGCAGAA 168 703 629 Antisense
GGAAATGTTTCCAGACTCGCTTAAC 507 527 684 Antisense
TACCTGCTGCTGGGCATCATTGTGA 48 651 796 Antisense
AATCCAGAAATCGACGGCCTATCCC 251 165 826 Antisense
AAAGCGATAATCACCGCATTCCTCC 54 125 859 Antisense
TATTAATGTTCTTCTCCAGTTCTGC 553 663 891 Antisense
TTCTGCCTCATCAACAATCCTAGAT 120 695 910 Antisense
ATCCTAGATCTGCTCCTAGTCGACT 65 39 926 Antisense
CAGATCCTGAATCGGCAGTTCCACG 560 205 973 Antisense
ATGGGACCCGACAATGAGCTTCCAA 615 49 1032 Antisense
Sequence Source Affymetrix Proprietary Database