[Home] | [Total List]

[190206_s_at] transcritpion factor /// transcritpion factor

Description F55A3.7 /REP_DB=WormBase Gene ID /WP=CE17116 /TR=Q9N5S0 /GB=AAF39838.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=transcritpion factor
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 56      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 497
(-0.6)
P 		410.3
(-3)
P 		548.5
(0.9)
P 		623.5
(3)
P 		213
B 580.4
(1.3)
P 		376.7
(-3)
P 		444.1
(-1.6)
P 		658.5
(3)
P 		282
C 697.5
(3)
P 		652.7
(1.9)
P 		454.4
(-3)
P 		569.1
(-0.2)
P 		243
avr 591.6
(1.9) 		479.9
(-3) 		482.3
(-2.9) 		617
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 230.1
(-3)
P 		530.2
(2.8)
P 		379.3
(-0.1)
P 		396.7
(0.2)
P 		447.3
(1.2)
P 		539.7
(3)
P 		310
B 493.3
(-0.6)
P 		523.5
(0.3)
P 		618.2
(3)
P 		409.7
(-3)
P 		409.4
(-3)
P 		567.7
(1.5)
P 		209
C 743.1
(3)
P 		440.3
(-1.2)
P 		412.5
(-1.5)
P 		306.8
(-3)
P 		506.1
(-0.3)
P 		627.5
(1.4)
P 		436
avr 488.8
(0.4) 		498
(0.7) 		470
(-0.1) 		371.1
(-3) 		454.3
(-0.6) 		578.3
(3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 181
(3)
P 		89.1
(-3)
P 		143.4
(0.5)
P 		91.3
(-2.9)
P 		92
B 185.1
(3)
P 		93
(-3)
P 		102.9
(-2.4)
P 		140.3
(0.1)
P 		92
C 230.9
(3)
P 		187.7
(1.1)
P 		158.4
(-0.2)
P 		96
(-3)
P 		135
avr 199
(3) 		123.3
(-2.1) 		134.9
(-1.3) 		109.2
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 42.4
(-3)
P 		188.6
(3)
P 		82.6
(-1.4)
P 		100.6
(-0.6)
P 		135
(0.8)
P 		131.4
(0.7)
P 		146
B 171.6
(0.7)
P 		174.3
(0.8)
P 		150.1
(-0.6)
P 		108.5
(-3)
P 		166.3
(0.4)
P 		211.7
(3)
P 		103
C 275.5
(3)
P 		134.4
(-1)
P 		105
(-1.8)
P 		61.7
(-3)
P 		163.8
(-0.1)
P 		210.1
(1.2)
P 		214
avr 163.2
(1.6) 		165.8
(1.8) 		112.6
(-1.6) 		90.3
(-3) 		155
(1.1) 		184.4
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190206_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.699
Sequence Type Exemplar sequence
Representative Public ID F55A3.7 NCBI
Target Description F55A3.7 /REP_DB=WormBase Gene ID /WP=CE17116 /TR=Q9N5S0 /GB=AAF39838.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=transcritpion factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060419(11), NM_060420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060419 NCBI Caenorhabditis elegans F55A3.7 (F55A3.7) mRNA, complete cds. 11/11 A 
NM_060420 NCBI Caenorhabditis elegans F55A3.3 (F55A3.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000019265 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10793249:10796938:-1 11/11 None
SNAP00000019262 ENSEMBL cdna:SNAP chromosome:CEL140:I:10797258:10801022:1 11/11 None
GENEFINDER00000019267 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10797258:10801022:1 11/11 None
F55A3.7 ENSEMBL cdna:known chromosome:CEL140:I:10793249:10795984:-1 gene:F55A3.7 11/11 A 
F55A3.3 ENSEMBL cdna:known chromosome:CEL140:I:10797251:10801268:1 gene:F55A3.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019259 6/11 Cross Hyb Matching Probes None
SNAP00000019260 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10797308-10800810(+) 92.05 92.92
chrI:10793179-10795915(-) 98.4 100.0
Public Domain and Genome References
Gene Title transcritpion factor
transcritpion factor
Ensembl F55A3.7
F55A3.3
Entrez Gene 172984 Entrez gene
186272 Entrez gene
SwissProt Q9N5R9 EMBL-EBI
Q9N5S0 EMBL-EBI
WormBase CE17113 Wormbase
CE32191 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12578_AT transcriptional regulator-related at
ATH1-121501:254992_AT transcriptional regulator-related at
CANINE:1602302_AT similar to chromatin-specific transcription elongation factor large subunit cfa
CANINE:1598080_AT similar to chromatin-specific transcription elongation factor large subunit cfa
CANINE:1588193_AT similar to chromatin-specific transcription elongation factor large subunit cfa
CANINE_2:CFA.7705.1.A1_A_AT similar to chromatin-specific transcription elongation factor large subunit cfa
CANINE_2:CFA.7705.1.A1_AT similar to chromatin-specific transcription elongation factor large subunit cfa
CANINE_2:CFA.7705.2.A1_S_AT similar to chromatin-specific transcription elongation factor large subunit cfa
CANINE_2:CFAAFFX.9353.1.S1_S_AT similar to chromatin-specific transcription elongation factor large subunit cfa
DROSOPHILA_2:1630638_AT dm
DROSOPHILA_2:1632743_A_AT dm
DROSGENOME1:143225_AT dm
HG-U133A:217815_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:217815_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-FOCUS:217815_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U133A_2:217815_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:233827_S_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U133B:233827_S_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HU35KSUBB:RC_N30795_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
U133_X3P:G6005756_3P_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
U133_X3P:HS.14963.1.S1_3P_A_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U95B:57040_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U95C:60675_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U95E:68143_AT suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U95D:89518_AT Suppressor of Ty 16 homolog (S. cerevisiae) hs
HG-U95D:90470_R_AT Suppressor of Ty 16 homolog (S. cerevisiae) hs
MG-U74CV2:165821_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MOE430A:1449578_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MOUSE430A_2:1449578_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MOUSE430_2:1449578_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MOE430A:1419741_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MOUSE430A_2:1419741_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MOUSE430_2:1419741_AT suppressor of Ty 16 homolog (S. cerevisiae) mm
MG-U74CV2:168261_AT Suppressor of Ty 16 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3710708) mm
RG-U34B:RC_AA946038_AT suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RG-U34C:AA850372_AT suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RAE230A:1398980_AT suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1398980_AT suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RAE230A:1375407_AT Suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1375407_AT Suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RAE230A:1377281_AT Suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1377281_AT Suppressor of Ty 16 homolog (S. cerevisiae) (predicted) rn
YEAST_2:1774676_AT Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39838 Hypothetical protein F55A3.7 [Caenorhabditis elegans] ref|NP_492820.2| F55A3.7 [Caenorhabditis elegans] 0.0
blast AAF39835 Hypothetical protein F55A3.3 [Caenorhabditis elegans] ref|NP_492821.1| F55A3.3 [Caenorhabditis elegans] 0.0
blast CAE66834 Hypothetical protein CBG12204 [Caenorhabditis briggsae] 0.0
blast NP_009123 chromatin-specific transcription elongation factor large subunit [Homo sapiens] gb|AAD43978.1| chromatin-specific transcription elongation factor FACT 140 kDa subunit [Homo sapiens] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190206_S_AT
ctttgccactccaggatctcaagttggaaaggatagtgggcaattcccacatccacttgc
acactatatgaaggagttcacgttccgtgcgagcaacatcaaggatcatcacagtgattc
gactgctccgagccgtaatttgagcaccgcattccgatttatcaaggaaatgcagaagag
attcaagtctgaagaggctgaacaacgggagaaggaaggcgctgttaagcaggacaaatt
gattttgagccagaacaaattgaatccaaagctcaatcttctgatttgtccaaatattat
tcagaagcttatcaccggatcgttggaggctcatactaatggatttagatttttattcaa
ttcattttccagatacacatctcttcgcgcattctttgaagaaggtggatggagtttcct
gaatgctgaatctgataatgaagaggcaatggatgattctgatgattcggatgcttatga
tcctgaagaagaagatgcatctgctggatcaggaagtgaaagtgatgaagatgaaagtga
aggtgaagagactgaatccgatgatgatgatgaaggatcgttggattccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGCCACTCCAGGATCTCAAGTT 271 223 888 Antisense
GCCACTCCAGGATCTCAAGTTGGAA 275 279 892 Antisense
GATAGTGGGCAATTCCCACATCCAC 346 425 919 Antisense
CCACATCCACTTGCACACTATATGA 501 275 934 Antisense
AGGATCATCACAGTGATTCGACTGC 125 57 989 Antisense
GAAGAGGCAATGGATGATTCTGATG 419 337 1327 Antisense
ATTCGGATGCTTATGATCCTGAAGA 627 9 1352 Antisense
GAAGAAGATGCATCTGCTGGATCAG 651 339 1375 Antisense
GATGCATCTGCTGGATCAGGAAGTG 513 413 1381 Antisense
GTGAAGAGACTGAATCCGATGATGA 426 481 1430 Antisense
ATGATGAAGGATCGTTGGATTCCGA 271 45 1454 Antisense
Sequence Source Affymetrix Proprietary Database