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[190205_at] transcritpion factor

Description F55A3.7 /REP_DB=WormBase Gene ID /WP=CE17116 /TR=Q9N5S0 /GB=AAF39838.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=transcritpion factor
Cluster 6grp_total > 95      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 44.2
(-0.9)
A 		70.9
(3)
A 		32.2
(-2.6)
A 		29.4
(-3)
A 		42
B 19
(-0.6)
A 		37.9
(2.4)
A 		4.1
(-3)
A 		42
(3)
A 		38
C 41.8
(1.8)
A 		27.9
(-3)
A 		45.1
(3)
A 		37.7
(0.4)
A 		17
avr 35
(-0.4) 		45.6
(3) 		27.1
(-3) 		36.4
(0) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 20.9
(-1.3)
A 		4.5
(-3)
A 		4.9
(-3)
A 		53
(2)
A 		63.1
(3)
A 		32.8
(-0.1)
A 		59
B 39.2
(0.1)
A 		14.6
(-3)
A 		31.2
(-0.9)
A 		46.5
(1.1)
A 		54
(2)
A 		61.8
(3)
A 		47
C 23.9
(-0.6)
A 		24.2
(-0.5)
A 		23.8
(-0.6)
A 		11.6
(-3)
A 		42.1
(3)
A 		34.2
(1.4)
A 		31
avr 28
(-0.9) 		14.4
(-3) 		20
(-2.1) 		37
(0.5) 		53.1
(3) 		42.9
(1.4) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.1
(3)
A 		15.4
(2.6)
A 		8.4
(-0.9)
A 		4.3
(-3)
A 		12
B 6.1
(0.7)
A 		9.4
(3)
A 		0.9
(-3)
A 		8.9
(2.6)
A 		9
C 13.8
(1.8)
A 		8
(-2)
A 		15.7
(3)
A 		6.4
(-3)
A 		9
avr 12
(3) 		10.9
(1.8) 		8.3
(-1) 		6.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.9
(-2.1)
A 		1.6
(-2.8)
A 		1.1
(-3)
A 		13.4
(1.1)
A 		19
(3)
A 		8
(-0.7)
A 		18
B 13.7
(-0.1)
A 		4.9
(-3)
A 		7.6
(-2.1)
A 		12.3
(-0.5)
A 		21.9
(2.6)
A 		23
(3)
A 		18
C 8.8
(0.5)
A 		7.4
(-0.3)
A 		6.1
(-1)
A 		2.3
(-3)
A 		13.6
(3)
A 		11.5
(1.9)
A 		11
avr 8.8
(-1.1) 		4.6
(-3) 		4.9
(-2.9) 		9.3
(-0.9) 		18.2
(3) 		14.2
(1.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.699
Sequence Type Exemplar sequence
Representative Public ID F55A3.7 NCBI
Target Description F55A3.7 /REP_DB=WormBase Gene ID /WP=CE17116 /TR=Q9N5S0 /GB=AAF39838.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=transcritpion factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060419 NCBI Caenorhabditis elegans F55A3.7 (F55A3.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000019265 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10793249:10796938:-1 11/11 None
F55A3.7 ENSEMBL cdna:known chromosome:CEL140:I:10793249:10795984:-1 gene:F55A3.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019259 1/11 Cross Hyb Matching Probes None
SNAP00000019260 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10797308-10800810(+) 92.05 92.92
chrI:10793179-10795915(-) 98.4 100.0
Public Domain and Genome References
Gene Title transcritpion factor
Ensembl F55A3.7
Entrez Gene 186272 Entrez gene
SwissProt Q9N5S0 EMBL-EBI
WormBase CE32191 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39838 Hypothetical protein F55A3.7 [Caenorhabditis elegans] ref|NP_492820.2| F55A3.7 [Caenorhabditis elegans] 0.0
blast AAF39835 Hypothetical protein F55A3.3 [Caenorhabditis elegans] ref|NP_492821.1| F55A3.3 [Caenorhabditis elegans] 1.0E-106
blast CAE66834 Hypothetical protein CBG12204 [Caenorhabditis briggsae] 4.0E-77
blast CAE66834 Hypothetical protein CBG12204 [Caenorhabditis briggsae] 7.0E-77
Sequence
Target Sequence 
>C. ELEGANS:190205_AT
ttcgactgctccgagccgtaatttgagcaccgcattccgatttatcaaggaaatgcagaa
gagattcaagtctgaagaggctgaacaacgggagaaggaaggcgctgttaagcaggacaa
attgattttgagccagaacaaattgaatccaaagctcaatcttctgatttgtccaaatat
tattcagaagcttatcaccggatcgttggaggctcatactaatggatttagatttttatt
caattcattttccagatacacatctcttcgcgcattctttgaagaaggtggatggagttt
cctgaatgctgaatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGACTGCTCCGAGCCGTAATTTG 462 691 1005 Antisense
CTCCGAGCCGTAATTTGAGCACCGC 271 233 1013 Antisense
AGCACCGCATTCCGATTTATCAAGG 564 77 1030 Antisense
GGAAGGCGCTGTTAAGCAGGACAAA 88 533 1101 Antisense
TGAATCCAAAGCTCAATCTTCTGAT 214 575 1148 Antisense
AGCTCAATCTTCTGATTTGTCCAAA 339 79 1157 Antisense
TATTCAGAAGCTTATCACCGGATCG 620 663 1185 Antisense
TATCACCGGATCGTTGGAGGCTCAT 103 659 1197 Antisense
CAATTCATTTTCCAGATACACATCT 176 181 1245 Antisense
CATCTCTTCGCGCATTCTTTGAAGA 511 211 1265 Antisense
GGAGTTTCCTGAATGCTGAATCTGA 10 519 1298 Antisense
Sequence Source Affymetrix Proprietary Database