[Home] | [Total List]

[190204_at] 7tm receptor protein

Description Y73F8A.3 /REP_DB=WormBase Gene ID /WP=CE25596 /TR=Q9NA41 /GB=CAB70222.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster 6grp_total > 03      4grp_total > 19      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 44.7
(0.4)
A 		8.5
(-3)
A 		27.4
(-1.2)
A 		71.9
(3)
A 		63
B 22.9
(-2)
A 		62.9
(1.1)
A 		9.8
(-3)
A 		88.4
(3)
A 		79
C 21.1
(-3)
A 		59
(-1.1)
A 		21.8
(-3)
A 		143.2
(3)
P 		122
avr 29.6
(-2.3) 		43.5
(-1.2) 		19.7
(-3) 		101.2
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 15.2
(-0.1)
A 		3.4
(-2.8)
A 		3.2
(-2.9)
A 		2.7
(-3)
A 		29
(3)
A 		3.4
(-2.8)
A 		26
B 56.5
(3)
A 		25.8
(-0.4)
A 		11.4
(-1.9)
A 		33.1
(0.4)
A 		17.5
(-1.3)
A 		1.8
(-3)
A 		55
C 17
(-1.5)
A 		58.1
(3)
A 		29.9
(-0.1)
A 		53.4
(2.5)
A 		2.8
(-3)
A 		3.2
(-3)
A 		55
avr 29.6
(3) 		29.1
(2.9) 		14.8
(-0.3) 		29.7
(3) 		16.4
(0) 		2.8
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.3
(3)
A 		1.9
(-3)
A 		7.2
(-0.8)
A 		10.5
(0.6)
A 		14
B 7.3
(-1.2)
A 		15.5
(1.8)
A 		2.3
(-3)
A 		18.8
(3)
A 		17
C 7
(-3)
A 		17
(0.5)
A 		7.6
(-2.8)
A 		24.1
(3)
P 		17
avr 10.2
(-0.8) 		11.5
(-0.1) 		5.7
(-3) 		17.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.8
(-1.4)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		0.7
(-3)
A 		8.7
(3)
A 		0.8
(-2.9)
A 		8
B 19.7
(3)
A 		8.6
(-0.5)
A 		2.8
(-2.3)
A 		8.8
(-0.4)
A 		7.1
(-1)
A 		0.7
(-3)
A 		19
C 6.3
(-1.1)
A 		17.7
(3)
A 		7.6
(-0.6)
A 		10.7
(0.5)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		17
avr 9.6
(3) 		9.2
(2.7) 		3.7
(-1.1) 		6.7
(1) 		5.6
(0.2) 		0.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10205
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.3 NCBI
Target Description Y73F8A.3 /REP_DB=WormBase Gene ID /WP=CE25596 /TR=Q9NA41 /GB=CAB70222.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070439 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-42) (srj-42) mRNA, complete cds. 11/11 None
SNAP00000030804 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15250114:15251128:-1 11/11 None
Y73F8A.3 ENSEMBL cdna:known chromosome:CEL140:IV:15250114:15252219:-1 gene:Y73F8A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15250119-15252270(-) 98.03 100.0
Public Domain and Genome References
Gene Title 7tm receptor protein
Gene Symbol srj-42
Ensembl Y73F8A.3
Entrez Gene 190670 Entrez gene
SwissProt Q9NA41 EMBL-EBI
WormBase CE34617 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70222 Hypothetical protein Y73F8A.3 [Caenorhabditis elegans] ref|NP_502840.2| Serpentine Receptor, class J family member (srj-42) [Caenorhabditis elegans] 0.0
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 1.0E-104
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 1.0E-104
blast CAB70222 Hypothetical protein Y73F8A.3 [Caenorhabditis elegans] ref|NP_502840.2| Serpentine Receptor, class J family member (srj-42) [Caenorhabditis elegans] 1.0E-104
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 7.0E-52
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 3.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502840.2 7 10-30,43-65,91-113,126-148,197-219,247-269,284-306
Y73F8A.3 7 10-30,43-65,91-113,126-148,197-219,247-269,284-306
SNAP00000030804 4 2-24,67-89,117-139,154-176
Sequence
Target Sequence 
>C. ELEGANS:190204_AT
gcaacatgctatttcttgggccaagcgggtcctgaaatgaaacagtatgtcagtgaagat
tttgcaatagtatatggagaaaattcaacaaatttcaatatggttggagtaatttatcac
aagggcgtggcatatataaccaaagttcgatcatggctaacagttttcctgtgctctttt
ttgtcagttgcatcaattattgcatttgttttctttgcacgtttggtaatgaaaaaatta
aatcaagcttccacaagcatcaaaacttcaacatttcaattcgaactcctacgggcacta
attgtgcagactctcatcccaattgtcatcagcttttcgccatgtctcctctgttggtac
agtcctatttttggaatacagtttgcgagagggttcaactacttcgaagtcagtgctctt
tcagttttttcgtttgtggacccagttgcaattatcctttgtcttccaattttccgtgta
agagttctgaagctctggaaaccagtttcatcaattacaggtggacctgtaaatcccact
actatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACATGCTATTTCTTGGGCCAAG 71 319 496 Antisense
TTGGGCCAAGCGGGTCCTGAAATGA 669 665 511 Antisense
TTTCCTGTGCTCTTTTTTGTCAGTT 13 671 660 Antisense
TCAATTCGAACTCCTACGGGCACTA 391 633 771 Antisense
CTAATTGTGCAGACTCTCATCCCAA 428 227 793 Antisense
CCAATTGTCATCAGCTTTTCGCCAT 143 277 814 Antisense
TGTCTCCTCTGTTGGTACAGTCCTA 231 559 838 Antisense
AAGTCAGTGCTCTTTCAGTTTTTTC 455 157 902 Antisense
GACCCAGTTGCAATTATCCTTTGTC 12 383 934 Antisense
TTTGTCTTCCAATTTTCCGTGTAAG 29 617 953 Antisense
GGACCTGTAAATCCCACTACTATAC 418 519 1018 Antisense
Sequence Source Affymetrix Proprietary Database