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[190202_at] membrane glycoprotein

Description F11C1.3 /REP_DB=WormBase Gene ID /WP=CE03188 /TR=Q19344 /GB=CAA91027.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=membrane glycoprotein
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 25      4grp_highest_8_8 > 44      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 25      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 554.1
(3)
P 		318.3
(-3)
P 		453.5
(0.4)
P 		480.3
(1.1)
P 		236
B 545.2
(3)
P 		399.2
(-1.6)
P 		353.8
(-3)
P 		399.4
(-1.6)
P 		191
C 522.3
(3)
P 		397.6
(-2)
P 		371.3
(-3)
P 		408.7
(-1.5)
P 		151
avr 540.5
(3) 		371.7
(-3) 		392.9
(-2.2) 		429.5
(-0.9) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 583.6
(3)
P 		495.2
(1.8)
P 		242.4
(-1.7)
P 		144.1
(-3)
P 		270.4
(-1.3)
P 		167.3
(-2.7)
P 		440
B 501.6
(2.7)
P 		518.3
(3)
P 		233.2
(-1.8)
P 		231.7
(-1.8)
P 		159.6
(-3)
P 		196.4
(-2.4)
P 		359
C 406.2
(1.7)
P 		477.7
(3)
P 		386.6
(1.3)
P 		173.6
(-2.5)
P 		148
(-3)
P 		163.2
(-2.7)
P 		330
avr 497.1
(3) 		497.1
(3) 		287.4
(-0.9) 		183.1
(-2.9) 		192.7
(-2.7) 		175.6
(-3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 201.7
(3)
P 		69.1
(-3)
P 		118.6
(-0.8)
P 		70.3
(-2.9)
P 		133
B 173.9
(3)
P 		98.6
(-1.9)
P 		82
(-3)
P 		85.1
(-2.8)
P 		92
C 172.9
(3)
P 		114.3
(-0.4)
P 		129.4
(0.5)
P 		68.9
(-3)
P 		104
avr 182.8
(3) 		94
(-1.9) 		110
(-1) 		74.8
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 107.6
(0.1)
P 		176.1
(3)
P 		52.8
(-2.3)
P 		36.5
(-3)
P 		81.6
(-1.1)
P 		40.7
(-2.8)
P 		140
B 174.5
(3)
P 		172.5
(2.9)
P 		56.6
(-3)
P 		61.4
(-2.8)
P 		64.8
(-2.6)
P 		73.2
(-2.2)
P 		118
C 150.6
(3)
P 		145.8
(2.8)
P 		98.4
(0.3)
P 		34.9
(-3)
P 		47.9
(-2.3)
P 		54.6
(-2)
P 		116
avr 144.2
(2) 		164.8
(3) 		69.3
(-1.8) 		44.3
(-3) 		64.8
(-2) 		56.2
(-2.4) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17433
Sequence Type Exemplar sequence
Representative Public ID F11C1.3 NCBI
Target Description F11C1.3 /REP_DB=WormBase Gene ID /WP=CE03188 /TR=Q19344 /GB=CAA91027.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=membrane glycoprotein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077756 NCBI Caenorhabditis elegans F11C1.3 (F11C1.3) mRNA, complete cds. 11/11 None
SNAP00000035039 ENSEMBL cdna:SNAP chromosome:CEL140:X:12981780:12985673:1 11/11 None
GENEFINDER00000035051 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12981780:12985673:1 11/11 None
F11C1.3 ENSEMBL cdna:known chromosome:CEL140:X:12981734:12985770:1 gene:F11C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12981779-12985673(+) 100.0 100.0
Public Domain and Genome References
Gene Title membrane glycoprotein
Ensembl F11C1.3
Entrez Gene 181429 Entrez gene
SwissProt Q19344 EMBL-EBI
WormBase CE33994 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91027 Hypothetical protein F11C1.3 [Caenorhabditis elegans] ref|NP_510157.2| F11C1.3 [Caenorhabditis elegans] 0.0
blast CAE70361 Hypothetical protein CBG16919 [Caenorhabditis briggsae] 0.0
blast CAA96619 Hypothetical protein F07A5.3 [Caenorhabditis elegans] ref|NP_492081.1| F07A5.3 [Caenorhabditis elegans] 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002159 EMBL-EBI CD36 antigen 1.0E-126
Pfam IPR002159 EMBL-EBI CD36 antigen 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510157.2 2 3-25,512-534
F11C1.3 2 3-25,512-534
SNAP00000035039 1 487-509
GENEFINDER00000035051 2 3-25,512-534
Sequence
Target Sequence 
>C. ELEGANS:190202_AT
caatttctgcaacgcgtgctgcgacggatcacacgtcaatggaacatacgttatgccacc
aggaatggtcccgcaaaggtgcttgccaggacaaatggtcccaacaccatttggtgcaat
tctctccgccccgcatttttacggagcaccaaaagttgtcactgagtctatggttggtat
tcatccagacccagaacttcatcgaccaggaacgttttatataaatcccgcaacgggaag
tacaattggtggtgaatttagaatgatgctttcaattccagtctttcagtcattagcctg
gacattaatgtcaaatgctccaaatgcgataatgccatccttcacattaaccatcggtgt
agttatgaaagactacgctgtcaactacatttacttcaatacggtgacgattcccaatat
cgttctgggactcggaatcggtttcacagcagtgtccctgattgcagtcctcctttgggg
attctgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTCTGCAACGCGTGCTGCGAC 102 181 1041 Antisense
GTGCTGCGACGGATCACACGTCAAT 400 479 1056 Antisense
GTTATGCCACCAGGAATGGTCCCGC 37 445 1090 Antisense
GTCCCGCAAAGGTGCTTGCCAGGAC 547 475 1108 Antisense
CTCCGCCCCGCATTTTTACGGAGCA 555 233 1164 Antisense
TCATCCAGACCCAGAACTTCATCGA 648 621 1221 Antisense
GCTTTCAATTCCAGTCTTTCAGTCA 366 303 1308 Antisense
AATGCGATAATGCCATCCTTCACAT 199 165 1363 Antisense
TGGGACTCGGAATCGGTTTCACAGC 212 553 1466 Antisense
GTTTCACAGCAGTGTCCCTGATTGC 695 449 1481 Antisense
CAGTCCTCCTTTGGGGATTCTGTTA 50 203 1505 Antisense
Sequence Source Affymetrix Proprietary Database