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[190200_at] D-amino acid oxidase

Description C47A10.5 /REP_DB=WormBase Gene ID /WP=CE15718 /TR=O45307 /GB=CAB03970.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=D-amino acid oxidase
Cluster 6grp_total > 73      4grp_total > 07      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 141.3
(3)
P 		51.4
(-3)
A 		88.8
(-0.5)
A 		121
(1.6)
P 		90
B 97.6
(1.3)
P 		37.7
(-3)
A 		69.9
(-0.7)
A 		121.1
(3)
P 		83
C 104.6
(1.4)
A 		64.7
(-3)
A 		103.4
(1.3)
A 		118.5
(3)
A 		54
avr 114.5
(2.5) 		51.3
(-3) 		87.4
(0.1) 		120.2
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 11.1
(-3)
A 		85.7
(-0.5)
A 		147.4
(1.6)
P 		187.2
(3)
P 		104.5
(0.2)
A 		129.6
(1)
A 		176
B 46
(-3)
A 		50.7
(-2.8)
A 		111.9
(-0.2)
P 		163.6
(2.1)
P 		185.4
(3)
P 		114.8
(-0)
P 		139
C 33.4
(-3)
A 		127.9
(1.3)
A 		152.9
(2.4)
P 		166.4
(3)
P 		111.9
(0.5)
P 		104.2
(0.2)
P 		133
avr 30.2
(-3) 		88.1
(-0.6) 		137.4
(1.5) 		172.4
(3) 		133.9
(1.4) 		116.2
(0.6) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 51.4
(3)
P 		11.2
(-3)
A 		23.2
(-1.2)
A 		17.7
(-2)
P 		40
B 31.1
(3)
P 		9.3
(-3)
A 		16.2
(-1.1)
A 		25.8
(1.5)
P 		22
C 34.6
(2.5)
A 		18.6
(-3)
A 		36
(3)
A 		20
(-2.5)
A 		17
avr 39
(3) 		13
(-3) 		25.1
(-0.2) 		21.2
(-1.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 2
(-3)
A 		30.5
(0.8)
A 		32.1
(1)
P 		47.5
(3)
P 		31.5
(0.9)
A 		31.5
(0.9)
A 		46
B 16
(-3)
A 		16.9
(-2.9)
A 		27.2
(-1.9)
P 		43.3
(-0.2)
P 		75.3
(3)
P 		42.8
(-0.3)
P 		59
C 12.4
(-3)
A 		39
(3)
A 		38.9
(3)
P 		33.5
(1.8)
P 		36.2
(2.4)
P 		34.9
(2.1)
P 		27
avr 10.1
(-3) 		28.8
(-0) 		32.7
(0.6) 		41.4
(2) 		47.7
(3) 		36.4
(1.2) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12673
Sequence Type Exemplar sequence
Representative Public ID C47A10.5 NCBI
Target Description C47A10.5 /REP_DB=WormBase Gene ID /WP=CE15718 /TR=O45307 /GB=CAB03970.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=D-amino acid oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075090 NCBI Caenorhabditis elegans C47A10.5 (C47A10.5) mRNA, complete cds. 11/11 None
SNAP00000022111 ENSEMBL cdna:SNAP chromosome:CEL140:V:17776871:17780241:-1 9/11 None
GENEFINDER00000022127 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17776871:17779790:-1 11/11 None
C47A10.5 ENSEMBL cdna:known chromosome:CEL140:V:17776871:17779790:-1 gene:C47A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17776870-17779790(-) 99.32 100.0
Public Domain and Genome References
Gene Title D-amino acid oxidase
Ensembl C47A10.5
Entrez Gene 183530 Entrez gene
SwissProt O45307 EMBL-EBI
WormBase CE36691 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3884 D-amino-acid oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03970 Hypothetical protein C47A10.5 [Caenorhabditis elegans] ref|NP_507491.2| C47A10.5 [Caenorhabditis elegans] 0.0
blast CAB03970 Hypothetical protein C47A10.5 [Caenorhabditis elegans] ref|NP_507491.2| C47A10.5 [Caenorhabditis elegans] 1.0E-163
blast CAE61727 Hypothetical protein CBG05678 [Caenorhabditis briggsae] 1.0E-151
blast CAE60771 Hypothetical protein CBG04460 [Caenorhabditis briggsae] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 4.7E-105
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 2.4E-63
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 7.1E-10
Sequence
Target Sequence 
>C. ELEGANS:190200_AT
gtttcagtgccaggctcgaggagtcgagtttttgcacagaaaagtgcgcgatttagaaga
gctggccaacgagggctatgacgtcattgtgaattgcgccgggctcagtgggggcacttt
ggctggagacgacgattctgtctatccaattcgtggagttgtacttgatgttgaagctca
ttggcataagcattttaattataaggatttcatcacttttactattccaaaggagaacag
tgttgtaatcggctcggtgaagcaggaaaaccgctgggatctggaaattacggatgtaga
ccggaaagatattttggaaagatacgttgcactgcatccggctatgagggagccaaaaat
cttaggggagtggtcagggctcagaccagctcggaagactattcggattgagaaagtgga
gaaaaaatcggaaaaatctggaaaaaaatatactgtgagtagcaaaaaaaaaggaaaaaa
tgtagtccaccactatggccacggtggcaatggattcacattgggatggggcactgcagt
tgaagccaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCAGTGCCAGGCTCGAGGAGTC 214 449 456 Antisense
GAGCTGGCCAACGAGGGCTATGACG 327 387 514 Antisense
ATTGTGAATTGCGCCGGGCTCAGTG 441 3 541 Antisense
CTCAGTGGGGGCACTTTGGCTGGAG 299 207 559 Antisense
GACGACGATTCTGTCTATCCAATTC 111 379 583 Antisense
GATTTCATCACTTTTACTATTCCAA 114 429 661 Antisense
GAACAGTGTTGTAATCGGCTCGGTG 57 351 690 Antisense
GCACTGCATCCGGCTATGAGGGAGC 574 313 784 Antisense
GAGTGGTCAGGGCTCAGACCAGCTC 142 401 823 Antisense
AGTCCACCACTATGGCCACGGTGGC 7 61 939 Antisense
GGGGCACTGCAGTTGAAGCCACCAA 347 499 983 Antisense
Sequence Source Affymetrix Proprietary Database