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[190199_at]

Description C44C10.2 /REP_DB=WormBase Gene ID /WP=CE05409 /TR=Q27480 /GB=CAA93636.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450 like
Cluster 6grp_total > 11      4grp_total > 56      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 6.8
(-2.4)
A 		4.4
(-3)
A 		29.8
(3)
A 		21
(0.9)
A 		25
B 35.2
(3)
A 		5.5
(-3)
A 		27.4
(1.4)
A 		5.3
(-3)
A 		30
C 19.3
(-3)
A 		63.9
(3)
A 		27.8
(-1.9)
P 		25.5
(-2.2)
A 		45
avr 20.4
(-1.3) 		24.6
(1) 		28.3
(3) 		17.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 6.2
(-2.5)
A 		41.5
(3)
A 		6.7
(-2.4)
A 		5.8
(-2.6)
A 		23.8
(0.2)
A 		3
(-3)
A 		39
B 25.8
(3)
A 		9
(-1.6)
A 		13.2
(-0.5)
A 		4.4
(-2.9)
A 		5
(-2.7)
A 		3.9
(-3)
A 		22
C 5.2
(-3)
A 		34.9
(2.8)
A 		35.8
(3)
A 		5.9
(-2.9)
A 		26.6
(1.2)
A 		7.7
(-2.5)
A 		31
avr 12.4
(-1.1) 		28.5
(3) 		18.6
(0.5) 		5.4
(-2.9) 		18.5
(0.5) 		4.9
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.5
(-1.6)
A 		0.9
(-3)
A 		7.8
(3)
A 		3.1
(-1.1)
A 		7
B 11.2
(3)
A 		1.4
(-2.8)
A 		6.3
(0.1)
A 		1.1
(-3)
A 		10
C 6.4
(-2.1)
A 		18.4
(3)
A 		9.7
(-0.7)
P 		4.3
(-3)
A 		14
avr 6.7
(1.6) 		6.9
(1.8) 		7.9
(3) 		2.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		14.8
(3)
A 		1.4
(-2.7)
A 		1.5
(-2.7)
A 		7.2
(-0.2)
A 		0.7
(-3)
A 		14
B 9
(3)
A 		3
(-1.6)
A 		3.2
(-1.5)
A 		1.2
(-3)
A 		2
(-2.4)
A 		1.5
(-2.8)
A 		8
C 1.9
(-2.6)
A 		10.7
(3)
A 		9.1
(2)
A 		1.2
(-3)
A 		8.6
(1.7)
A 		2.6
(-2.1)
A 		10
avr 4
(-1) 		9.5
(3) 		4.6
(-0.6) 		1.3
(-3) 		5.9
(0.4) 		1.6
(-2.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17005
Sequence Type Exemplar sequence
Representative Public ID C44C10.2 NCBI
Target Description C44C10.2 /REP_DB=WormBase Gene ID /WP=CE05409 /TR=Q27480 /GB=CAA93636.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029289
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C44C10.2 ENSEMBL cdna:pseudogene chromosome:CEL140:X:11704809:11707159:-1 gene:C44C10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037986 7/11 Cross Hyb Matching Probes None
SNAP00000037971 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037977 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11704808-11710105(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44C10.2
Sequence
Target Sequence 
>C. ELEGANS:190199_AT
tggcgatttctcacgccatcaatccatcttaccaaattcctgcaatatactgggcacttg
ggcttaaaaaacagaaagatgcgcatttaaacacaatgaagactttcactgtcaacgtta
tcgcagacagaaaagctgcgattgcatcgggcgaagtggagaaagaaacttcgaagagga
aaatgaattttttagacattctgctcaataacgggatgactattccctctggtgcaaatg
tttcaattgctccacttgctctgcattcaaatgcacaagtctttccgaacccgaataaat
tcgaccctgaccgctttcttcctgatgaaatcgccaagagaaacgcttacgattttatgc
ctttctcggcgggcctcagaaactgcattggtgaaaaattcgccctattgaacgaaaaag
tcatgatgattcacatattgaaaaatttccggttagaaccaatgggtggtttttattcaa
caaaaccaatgtttgaggctgtggcaagaccttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGATTTCTCACGCCATCAATCC 245 545 1658 Antisense
CAATCCATCTTACCAAATTCCTGCA 130 183 1677 Antisense
GACTTTCACTGTCAACGTTATCGCA 71 373 1758 Antisense
ACGGGATGACTATTCCCTCTGGTGC 54 95 1868 Antisense
CAAATGTTTCAATTGCTCCACTTGC 555 193 1892 Antisense
CTCCACTTGCTCTGCATTCAAATGC 170 237 1907 Antisense
CAAATGCACAAGTCTTTCCGAACCC 479 193 1925 Antisense
TGACCGCTTTCTTCCTGATGAAATC 453 569 1965 Antisense
GAAACGCTTACGATTTTATGCCTTT 618 357 1997 Antisense
GCGGGCCTCAGAAACTGCATTGGTG 618 291 2026 Antisense
TGAGGCTGTGGCAAGACCTTCCAAT 396 567 2151 Antisense
Sequence Source Affymetrix Proprietary Database