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[190198_at] sulphate transporter

Description K12G11.1 /REP_DB=WormBase Gene ID /WP=CE12208 /TR=O17950 /GB=CAB04606.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sulphate transporter
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 22      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 04      6grp_highest_sub > De      6grp_cgc > 42      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 215.7
(-0.6)
P 		124.2
(-3)
P 		157
(-2.2)
P 		355.8
(3)
P 		232
B 191.9
(-2)
P 		152.6
(-2.6)
P 		122.6
(-3)
P 		548.8
(3)
P 		426
C 247.2
(-1)
P 		147.5
(-3)
P 		168.5
(-2.6)
P 		451.3
(3)
P 		304
avr 218.3
(-1.5) 		141.4
(-3) 		149.4
(-2.8) 		452
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 179.2
(1.7)
P 		174.9
(1.4)
P 		198.1
(3)
P 		155.3
(0.1)
P 		187.3
(2.3)
P 		110.1
(-3)
P 		88
B 195.7
(1.1)
P 		221.9
(3)
P 		190.6
(0.7)
P 		139.4
(-3)
P 		208.2
(2)
P 		157.5
(-1.7)
P 		83
C 185.4
(3)
P 		185.2
(3)
P 		153
(-2)
P 		184
(2.8)
P 		163.9
(-0.3)
P 		146.5
(-3)
P 		39
avr 186.8
(2.2) 		194
(3) 		180.6
(1.6) 		159.6
(-0.7) 		186.5
(2.2) 		138
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 78.5
(3)
P 		27
(-3)
P 		41
(-1.4)
P 		52.1
(-0.1)
P 		52
B 61.2
(-0.8)
P 		37.7
(-2.4)
P 		28.4
(-3)
P 		116.9
(3)
P 		89
C 81.8
(3)
P 		42.4
(-3)
P 		58.7
(-0.5)
P 		76.1
(2.1)
P 		39
avr 73.8
(2) 		35.7
(-3) 		42.7
(-2.1) 		81.7
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 33
(-1.9)
P 		62.2
(3)
P 		43.1
(-0.2)
P 		39.4
(-0.9)
P 		56.5
(2)
P 		26.8
(-3)
P 		35
B 68.1
(0.9)
P 		73.9
(1.7)
P 		46.3
(-1.8)
P 		36.9
(-3)
P 		84.6
(3)
P 		58.7
(-0.3)
P 		48
C 68.7
(3)
P 		56.5
(0.7)
P 		38.9
(-2.6)
P 		37
(-3)
P 		53
(0)
P 		49.1
(-0.7)
P 		32
avr 56.6
(1.2) 		64.2
(2.9) 		42.8
(-1.9) 		37.8
(-3) 		64.7
(3) 		44.9
(-1.4) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13263
Sequence Type Exemplar sequence
Representative Public ID K12G11.1 NCBI
Target Description K12G11.1 /REP_DB=WormBase Gene ID /WP=CE12208 /TR=O17950 /GB=CAB04606.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sulphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073588 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-4) (sulp-4) mRNA, complete cds. 11/11 None
GENEFINDER00000018972 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11877956:11882524:1 11/11 None
K12G11.1 ENSEMBL cdna:known chromosome:CEL140:V:11877948:11881714:1 gene:K12G11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018964 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11877955-11881602(+) 100.0 100.0
Public Domain and Genome References
Gene Title sulphate transporter
Gene Symbol sulp-4
Ensembl K12G11.1
Entrez Gene 179626 Entrez gene
SwissProt O17950 EMBL-EBI
WormBase CE12208 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17042_S_AT sulfate transporter at
ATH1-121501:255443_AT sulfate transporter at
CANINE_2:CFAAFFX.27927.1.S1_AT similar to Sulfate transporter (Diastrophic dysplasia protein) (Solute carrier family 26, member 2) cfa
CANINE_2:CFAAFFX.27932.1.S1_S_AT similar to Sulfate transporter (Diastrophic dysplasia protein) (Solute carrier family 26, member 2) cfa
CHICKEN:GGAAFFX.829.1.S1_S_AT similar to Sulfate transporter (Diastrophic dysplasia protein) gga
HG-U133_PLUS_2:205097_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U133A_2:205097_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-FOCUS:205097_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U133A:205097_AT solute carrier family 26 (sulfate transporter), member 2 hs
HU35KSUBB:RC_W15263_AT solute carrier family 26 (sulfate transporter), member 2 hs
HU35KSUBC:RC_AA621399_AT solute carrier family 26 (sulfate transporter), member 2 hs
HUGENEFL:U14528_AT solute carrier family 26 (sulfate transporter), member 2 hs
U133_X3P:HS.302738.0.S2_3P_AT solute carrier family 26 (sulfate transporter), member 2 hs
U133_X3P:HS.302738.0.S1_3P_AT solute carrier family 26 (sulfate transporter), member 2 hs
U133_X3P:HS.29981.0.S2_3P_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U133_PLUS_2:224959_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U133B:224959_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U133_PLUS_2:224963_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U133B:224963_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U95AV2:39637_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U95B:53061_AT solute carrier family 26 (sulfate transporter), member 2 hs
HG-U95B:53999_AT solute carrier family 26 (sulfate transporter), member 2 hs
MOE430A:1421145_AT solute carrier family 26 (sulfate transporter), member 2 mm
MOUSE430_2:1421145_AT solute carrier family 26 (sulfate transporter), member 2 mm
MOUSE430A_2:1421145_AT solute carrier family 26 (sulfate transporter), member 2 mm
MU11KSUBA:D42049_S_AT solute carrier family 26 (sulfate transporter), member 2 mm
MG-U74AV2:95935_AT solute carrier family 26 (sulfate transporter), member 2 mm
RG-U34A:D82883_AT solute carrier family 26 (sulfate transporter), member 2 rn
RAE230A:1369386_AT solute carrier family 26 (sulfate transporter), member 2 rn
RAT230_2:1369386_AT solute carrier family 26 (sulfate transporter), member 2 rn
RAE230B:1393513_AT Solute carrier family 26 (sulfate transporter), member 2 rn
RAT230_2:1393513_AT Solute carrier family 26 (sulfate transporter), member 2 rn
RG-U34C:RC_AI071445_AT Solute carrier family 26 (sulfate transporter), member 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8272 sulfate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8271 sulfate porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04606 Hypothetical protein K12G11.1 [Caenorhabditis elegans] ref|NP_505989.1| SULfate Permease family member (sulp-4) [Caenorhabditis elegans] gb|AAX34422.1| anion transporter SULP-4 [Caenorhabditis elegans] 0.0
blast CAE75276 Hypothetical protein CBG23242 [Caenorhabditis briggsae] 0.0
blast CAE75275 Hypothetical protein CBG23241 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 3.4E-40
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 3.4E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505989.1 11 76-98,113-135,142-164,204-226,239-261,281-303,324-343,369-391,434-456,460-482,503-525
K12G11.1 11 76-98,113-135,142-164,204-226,239-261,281-303,324-343,369-391,434-456,460-482,503-525
GENEFINDER00000018972 9 76-98,113-135,142-164,204-226,354-373,399-421,464-486,490-512,533-555
Sequence
Target Sequence 
>C. ELEGANS:190198_AT
aatggcatcttcttgcatcagttaaaggaacacaagacttccgtgatgcagaaagatacg
gagaaactgtttatttcaaaggaatttgcattttccgatttgatgctccattactcttcc
ataatgttgaatgtttcaaaaaatcaatcgaaaaggcatacactgaatggcaaaaatcgc
atgaattctatgtacttcgtgaggaacgagaaactattttaaatacaaaattagatggat
ctgatgaatcgattgatggaaaaatgtttcaaacagctcaatcgactttaaacactcatt
ctcctgatattttatctcgacattttgtaatcgattgttcaggttttacgttcattgatt
taatgggtgttagtgcactaaaagagattttctccgatatgagaaaacgtggaattctag
tgtactttgcaaatgcaaaagctccagtcagagagatgtttgagaaatgtcactttttca
attttgtttcaaaggaaaatttctacccaacaatgcgtgatgcaacaagtattgccagac
aacgacagctagaacttgggttcaaagatactggatatgtaccagaacacgatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCATCTTCTTGCATCAGTTAA 183 163 1634 Antisense
GAACACAAGACTTCCGTGATGCAGA 710 351 1661 Antisense
CGATTTGATGCTCCATTACTCTTCC 121 249 1729 Antisense
ATCGCATGAATTCTATGTACTTCGT 39 37 1809 Antisense
GTTTCAAACAGCTCAATCGACTTTA 383 449 1899 Antisense
TCGACTTTAAACACTCATTCTCCTG 610 601 1915 Antisense
CATTCTCCTGATATTTTATCTCGAC 310 217 1930 Antisense
GATTGTTCAGGTTTTACGTTCATTG 428 435 1966 Antisense
AACGTGGAATTCTAGTGTACTTTGC 645 143 2039 Antisense
ATTGCCAGACAACGACAGCTAGAAC 171 5 2164 Antisense
GGATATGTACCAGAACACGATCGAT 111 511 2206 Antisense
Sequence Source Affymetrix Proprietary Database