[Home] | [Total List]

[190197_s_at] kinesin-like protein

Description C06G3.2 /REP_DB=WormBase Gene ID /WP=CE07978 /TR=Q17753 /GB=AAB03132.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=kinesin-like protein
Cluster 6grp_total > 87      4grp_total > 34      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 52.7
(0.5)
A 		61.3
(2.4)
A 		36.5
(-3)
A 		64.1
(3)
A 		28
B 41.3
(-3)
A 		48
(-1.8)
A 		74.4
(3)
P 		71.4
(2.5)
A 		33
C 5.6
(-3)
A 		87.8
(3)
M 		29.9
(-1.2)
A 		65.4
(1.4)
A 		82
avr 33.2
(-3) 		65.7
(2.8) 		46.9
(-0.6) 		67
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 49
(-2.3)
P 		27.9
(-3)
A 		44.3
(-2.4)
A 		50.4
(-2.2)
P 		180.3
(2.2)
P 		202.7
(3)
P 		175
B 29.7
(-3)
A 		56.8
(-2.5)
A 		57.7
(-2.5)
A 		93.2
(-1.8)
P 		150.7
(-0.8)
P 		360.6
(3)
P 		331
C 69.9
(-2)
A 		35
(-2.6)
A 		9.2
(-3)
A 		103.5
(-1.4)
P 		144.6
(-0.7)
P 		360.9
(3)
P 		352
avr 49.5
(-2.7) 		39.9
(-2.9) 		37.1
(-3) 		82.4
(-2) 		158.5
(-0.3) 		308.1
(3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.2
(3)
A 		13.3
(-0.6)
A 		9.5
(-2.9)
A 		9.4
(-3)
A 		10
B 13.2
(-1.5)
A 		11.9
(-3)
A 		17.2
(3)
P 		15.2
(0.7)
A 		5
C 1.9
(-3)
A 		25.2
(3)
M 		10.4
(-0.8)
A 		11
(-0.7)
A 		23
avr 11.4
(-3) 		16.8
(3) 		12.4
(-1.9) 		11.9
(-2.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 9
(-3)
P 		9.9
(-2.9)
A 		9.6
(-2.9)
A 		12.8
(-2.5)
P 		54.4
(3)
P 		49.4
(2.3)
P 		45
B 10.3
(-3)
A 		18.9
(-2.6)
A 		14
(-2.8)
A 		24.7
(-2.3)
P 		61.2
(-0.5)
P 		134.5
(3)
P 		124
C 25.9
(-1.8)
A 		10.7
(-2.6)
A 		2.3
(-3)
A 		20.8
(-2.1)
P 		46.8
(-0.7)
P 		120.8
(3)
P 		119
avr 15.1
(-2.6) 		13.2
(-2.7) 		8.6
(-3) 		19.4
(-2.3) 		54.1
(-0.1) 		101.6
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190197_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10297
Sequence Type Exemplar sequence
Representative Public ID C06G3.2 NCBI
Target Description C06G3.2 /REP_DB=WormBase Gene ID /WP=CE07978 /TR=Q17753 /GB=AAB03132.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=kinesin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068692 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-18) (klp-18) mRNA, complete cds. 11/11 A 
SNAP00000008742 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7040196:7043281:1 11/11 None
GENEFINDER00000008746 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7040196:7043281:1 11/11 None
C06G3.2 ENSEMBL cdna:known chromosome:CEL140:IV:7040195:7043678:1 gene:C06G3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7040201-7043287(+) 100.0 100.0
chrIV:7797180-7800241(+) 95.28 95.28
Public Domain and Genome References
Gene Title kinesin-like protein
Gene Symbol klp-18
Ensembl C06G3.2
Entrez Gene 177474 Entrez gene
WormBase CE07978 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252691_AT kinesin motor protein-related at
CANINE:1596180_AT similar to kinesin family member 15 cfa
CANINE_2:CFA.17141.1.S1_AT similar to kinesin family member 15 cfa
CANINE_2:CFA.20053.1.S1_S_AT similar to kinesin family member 15 cfa
CANINE_2:CFAAFFX.21784.1.S1_AT similar to kinesin family member 15 cfa
CANINE_2:CFAAFFX.21784.1.S1_S_AT similar to kinesin family member 15 cfa
CANINE_2:CFAAFFX.21794.1.S1_AT similar to kinesin family member 15 cfa
CHICKEN:GGA.10632.1.S1_S_AT kinesin family member 15 gga
CHICKEN:GGA.9398.1.S1_AT kinesin family member 15 gga
CHICKEN:GGAAFFX.23697.1.S1_AT kinesin family member 15 gga
CHICKEN:GGAAFFX.23700.1.S1_AT kinesin family member 15 gga
CHICKEN:GGAAFFX.23700.2.S1_S_AT kinesin family member 15 gga
HG-U133_PLUS_2:219306_AT kinesin family member 15 hs
HG-U133A:219306_AT kinesin family member 15 hs
HG-FOCUS:219306_AT kinesin family member 15 hs
HG-U133A_2:219306_AT kinesin family member 15 hs
U133_X3P:G9910265_3P_AT kinesin family member 15 hs
HG-U95E:77201_AT kinesin family member 15 hs
HU35KSUBB:RC_T81035_AT Kinesin family member 15 hs
MOUSE430_2:1431718_AT kinesin family member 15 mm
MOE430B:1431718_AT kinesin family member 15 mm
MU11KSUBA:C79507_RC_F_AT kinesin family member 15 mm
MG-U74BV2:115498_AT kinesin family member 15 mm
MG-U74BV2:115499_G_AT kinesin family member 15 mm
MG-U74BV2:108287_R_AT kinesin family member 15 mm
MG-U74BV2:164299_F_AT kinesin family member 15 mm
MU19KSUBB:TC34186_AT kinesin family member 15 mm
RAT230_2:1374794_AT kinesin-like 7 rn
RAE230A:1374794_AT kinesin-like 7 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03132 Kinesin-like protein protein 18 [Caenorhabditis elegans] ref|NP_501093.1| Kinesin-Like Protein family member (klp-18) [Caenorhabditis elegans] gb|AAO34669.1| kinesin-like protein-18 [Caenorhabditis elegans] 0.0
blast BAB19356.2 kinesin like protein KLP-18 [Caenorhabditis elegans] 0.0
blast AAA82277 Kinesin-like protein protein 10, isoform a [Caenorhabditis elegans] ref|NP_001023044.1| Kinesin-Like Protein family member (klp-10) [Caenorhabditis elegans] dbj|BAB82459.1| Kinesin like protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.3E-121
Sequence
Target Sequence 
>C. ELEGANS:190197_S_AT
aagagaagctttctgttagcttgaaaaagcaagaagacaccattcgaagacagagcttgg
ccgagaatcaaggaaagctagaagtcatggaaaataagaatcgcgtgctctctgagacaa
tagaatctcttcaatcgcagcattcacaggacacggaggtcatcaacgcaggtctgcgaa
caagaggagatcgggtgggttacgtggataaacttcgcgtcgagaagaaagctctcgaag
aaaccatttctcaacttcgctcagagaatgataaactgaagaagatcatgagaggagaat
cggccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGAAGCTTTCTGTTAGCTTGAA 176 123 2468 Antisense
AGACACCATTCGAAGACAGAGCTTG 350 71 2502 Antisense
GAAGACAGAGCTTGGCCGAGAATCA 92 341 2513 Antisense
ATCGCGTGCTCTCTGAGACAATAGA 558 37 2567 Antisense
TCAATCGCAGCATTCACAGGACACG 277 633 2598 Antisense
GCAGCATTCACAGGACACGGAGGTC 257 313 2604 Antisense
GACACGGAGGTCATCAACGCAGGTC 487 367 2617 Antisense
GGAGGTCATCAACGCAGGTCTGCGA 388 515 2622 Antisense
AAGAGGAGATCGGGTGGGTTACGTG 344 151 2649 Antisense
GTGGGTTACGTGGATAAACTTCGCG 238 487 2662 Antisense
GATCATGAGAGGAGAATCGGCCAAT 60 417 2751 Antisense
Sequence Source Affymetrix Proprietary Database