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[190196_at] arrestin like protein

Description ZK938.4 /REP_DB=WormBase Gene ID /WP=CE02399 /TR=Q23674 /GB=CAA90144.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=arrestin like protein
Cluster 6grp_total > 03      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 100.5
(1.9)
A 		16.8
(-2.6)
A 		9.8
(-3)
A 		120.7
(3)
A 		111
B 32.8
(-3)
A 		38.9
(-2.4)
A 		45.6
(-1.8)
A 		98.3
(3)
A 		66
C 67.5
(-0.2)
A 		9.3
(-3)
A 		28.4
(-2.1)
A 		135.1
(3)
M 		126
avr 66.9
(-0.2) 		21.7
(-3) 		27.9
(-2.6) 		118
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 118.2
(3)
A 		63.8
(-0.1)
A 		41.7
(-1.3)
A 		62.1
(-0.2)
A 		86.4
(1.2)
A 		12.6
(-3)
A 		106
B 110.2
(2.7)
A 		114
(3)
A 		32.9
(-3)
A 		37.3
(-2.7)
A 		68.9
(-0.3)
A 		52.2
(-1.6)
A 		81
C 50.5
(-1.4)
A 		81.3
(0.1)
A 		20.3
(-3)
A 		136.5
(3)
A 		49.5
(-1.5)
A 		29.3
(-2.5)
A 		116
avr 93
(3) 		86.4
(2.4) 		31.6
(-3) 		78.6
(1.6) 		68.3
(0.6) 		31.4
(-3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36.6
(3)
A 		3.6
(-2.8)
A 		2.6
(-3)
A 		17.7
(-0.3)
A 		34
B 10.5
(-2.5)
A 		9.6
(-3)
A 		10.6
(-2.5)
A 		21
(3)
A 		11
C 22.3
(2.9)
A 		2.7
(-3)
A 		9.9
(-0.9)
A 		22.8
(3)
M 		20
avr 23.1
(3) 		5.3
(-3) 		7.7
(-2.2) 		20.5
(2.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 21.8
(1.9)
A 		22.7
(2.1)
A 		9.1
(-1.4)
A 		15.7
(0.3)
A 		26.1
(3)
A 		3.1
(-3)
A 		23
B 38.4
(3)
A 		37.9
(2.9)
A 		8
(-3)
A 		9.9
(-2.6)
A 		28
(0.9)
A 		19.5
(-0.7)
A 		30
C 18.7
(0.6)
A 		24.8
(2.3)
A 		5.2
(-3)
A 		27.4
(3)
A 		16
(-0.1)
A 		9.8
(-1.8)
A 		22
avr 26.3
(2.4) 		28.5
(3) 		7.4
(-3) 		17.7
(-0.1) 		23.4
(1.5) 		10.8
(-2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3933
Sequence Type Exemplar sequence
Representative Public ID ZK938.4 NCBI
Target Description ZK938.4 /REP_DB=WormBase Gene ID /WP=CE02399 /TR=Q23674 /GB=CAA90144.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=arrestin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063718 NCBI Caenorhabditis elegans ZK938.4 (ZK938.4) mRNA, complete cds. 11/11 None
SNAP00000044675 ENSEMBL cdna:SNAP chromosome:CEL140:II:9835132:9836836:1 11/11 None
GENEFINDER00000044685 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9835132:9836836:1 11/11 None
ZK938.4 ENSEMBL cdna:known chromosome:CEL140:II:9835132:9836836:1 gene:ZK938.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9835128-9836833(+) 100.0 100.0
Public Domain and Genome References
Gene Title arrestin like protein
Ensembl ZK938.4
Entrez Gene 191469 Entrez gene
SwissProt Q23674 EMBL-EBI
WormBase CE02399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90144 Hypothetical protein ZK938.4 [Caenorhabditis elegans] ref|NP_496119.1| ZK938.4 [Caenorhabditis elegans] 0.0
blast CAE57962 Hypothetical protein CBG01023 [Caenorhabditis briggsae] 1.0E-180
blast AAB37591 Hypothetical protein T20D4.6 [Caenorhabditis elegans] ref|NP_503955.1| T20D4.6 [Caenorhabditis elegans] 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 5.4E-49
Pfam IPR000698 EMBL-EBI Arrestin 1.9E-50
Sequence
Target Sequence 
>C. ELEGANS:190196_AT
agctccgccttcctaaacaaggattcgtgtgtggagaaaatattccggtgactatgattg
tggataataagacatcgaaaagtttcaaaaagatatctctccgccttgtacaacgtgtca
catacaccggtttccgcgacggatttgttaactcacattctcaaccttgcatcggaaatg
aaaaagaaaaaattacctatgcaactcgtcttaatgctcaaacacgtgtggaagaacgtc
agatttcggagacaaatattgatatcaaaattgataaaaatgagaagcaagaagttgaaa
aaccgatacctcttccccctttgccgccatctaccaaaacctgtgagatcattgatgtcg
agtactttttgaaagtcaaaatgagcacgtcaggagcattgaaaagtgcagtaaagttgg
aacttgccttcataattggaacaatgccaatcgatcctgaaagaaagtacgagtacaaaa
agtctgtgtttggctttgctgcgacttccttgaaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCCGCCTTCCTAAACAAGGATT 597 77 578 Antisense
CAAAAAGATATCTCTCCGCCTTGTA 37 191 663 Antisense
CCGCCTTGTACAACGTGTCACATAC 644 261 678 Antisense
AACGTGTCACATACACCGGTTTCCG 482 139 689 Antisense
TTCCGCGACGGATTTGTTAACTCAC 662 687 709 Antisense
TTAACTCACATTCTCAACCTTGCAT 136 685 725 Antisense
AAAATTACCTATGCAACTCGTCTTA 607 131 766 Antisense
CCGCCATCTACCAAAACCTGTGAGA 89 263 901 Antisense
GAACAATGCCAATCGATCCTGAAAG 476 351 1016 Antisense
AAAGTCTGTGTTTGGCTTTGCTGCG 173 123 1056 Antisense
CTTTGCTGCGACTTCCTTGAAAAAT 509 219 1071 Antisense
Sequence Source Affymetrix Proprietary Database