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[190195_at] extracellular protein

Description C07A4.2 /REP_DB=WormBase Gene ID /WP=CE07990 /TR=Q93192 /GB=CAB01715.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=extracellular protein
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 49      6grp_total > 09      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 244
(3)
P 		96.1
(-3)
A 		129.8
(-1.6)
P 		129.2
(-1.7)
M 		148
B 146.7
(2.5)
P 		102.3
(-0.6)
A 		154.2
(3)
P 		68.4
(-3)
A 		86
C 188.5
(3)
P 		127.7
(0.3)
P 		115.2
(-0.3)
P 		54.6
(-3)
P 		134
avr 193.1
(3) 		108.7
(-1.6) 		133.1
(-0.3) 		84.1
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 193.5
(3)
P 		114.9
(-1.2)
P 		82.2
(-3)
P 		123.9
(-0.8)
P 		121.2
(-0.9)
P 		83.3
(-2.9)
A 		111
B 170.6
(3)
P 		119.7
(-1.1)
P 		126.3
(-0.6)
P 		124.1
(-0.8)
P 		118.7
(-1.2)
P 		96.5
(-3)
P 		74
C 166.7
(3)
P 		116.1
(-1.3)
P 		144.1
(1.1)
M 		131
(-0)
P 		138.2
(0.6)
P 		95.6
(-3)
P 		71
avr 176.9
(3) 		116.9
(-1.2) 		117.5
(-1.2) 		126.3
(-0.6) 		126
(-0.6) 		91.8
(-3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 88.8
(3)
P 		20.9
(-2.8)
A 		33.9
(-1.7)
P 		18.9
(-3)
M 		70
B 46.8
(3)
P 		25.3
(-1)
A 		35.7
(0.9)
P 		14.6
(-3)
A 		32
C 62.4
(3)
P 		36.7
(0.1)
P 		40.2
(0.5)
P 		9.2
(-3)
P 		53
avr 66
(3) 		27.6
(-1.4) 		36.6
(-0.4) 		14.2
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 35.7
(1.6)
P 		40.9
(3)
P 		17.9
(-3)
P 		31.4
(0.5)
P 		36.6
(1.9)
P 		20.3
(-2.4)
A 		23
B 59.4
(3)
P 		39.8
(-1.1)
P 		30.7
(-3)
P 		32.9
(-2.5)
P 		48.2
(0.7)
P 		36
(-1.9)
P 		29
C 61.8
(3)
P 		35.4
(-1.5)
P 		36.7
(-1.2)
M 		26.3
(-3)
P 		44.7
(0.1)
P 		32
(-2)
P 		36
avr 52.3
(3) 		38.7
(-0.4) 		28.4
(-3) 		30.2
(-2.5) 		43.2
(0.7) 		29.4
(-2.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17030
Sequence Type Exemplar sequence
Representative Public ID C07A4.2 NCBI
Target Description C07A4.2 /REP_DB=WormBase Gene ID /WP=CE07990 /TR=Q93192 /GB=CAB01715.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=extracellular protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077305 NCBI Caenorhabditis elegans C07A4.2 (C07A4.2) mRNA, complete cds. 11/11 None
SNAP00000044347 ENSEMBL cdna:SNAP chromosome:CEL140:X:10172296:10173955:1 11/11 None
GENEFINDER00000044352 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10172296:10173955:1 11/11 None
C07A4.2 ENSEMBL cdna:known chromosome:CEL140:X:10172255:10174086:1 gene:C07A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10172465-10173955(+) 100.0 100.0
Public Domain and Genome References
Gene Title extracellular protein
Ensembl C07A4.2
Entrez Gene 182351 Entrez gene
SwissProt Q93192 EMBL-EBI
WormBase CE31408 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01715 Hypothetical protein C07A4.2 [Caenorhabditis elegans] ref|NP_509706.2| C07A4.2 [Caenorhabditis elegans] 0.0
blast CAE70534 Hypothetical protein CBG17169 [Caenorhabditis briggsae] 1.0E-177
blast CAB01716 Hypothetical protein C07A4.3 [Caenorhabditis elegans] ref|NP_509707.1| C07A4.3 [Caenorhabditis elegans] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.8E-24
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.8E-24
Sequence
Target Sequence 
>C. ELEGANS:190195_AT
ttccgtacctctggacactgatgttaaacgattaagcaatattggtgcaattaaatctta
cctattctcgaagagcaaagtagacaaacaagatccagctcgatatgatattccaaagct
caaggaatggctcgtctcgtatcacaatgtttacagatcaaagcatggtgctccagcatt
gatttctgattctgtattagatagccgtggaaagcggtgggccgatgaactggcttatca
caaaggatgtctggttcatgaacaaccaagaacatacggtgagaacctgttctttttcgg
tgctcgtcatctaccttctcctcaaactctcgctgctgcagttattcaaagtttttattt
ggaaggaattggatacaactattcaagctggaggccaatgtctttctttaaaactggtca
cttcactcaacttatttggaaaaattctcgtaaaattggagttggcgtctcaatagtcaa
atccagttcaattcgctccccatgtgtcagctcttctccaaatatgtactttatctatgt
tgtcgtcaaatatgatccggctggaaatttcgaatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGTACCTCTGGACACTGATGTT 174 699 483 Antisense
AATGGCTCGTCTCGTATCACAATGT 194 163 608 Antisense
GGTGCTCCAGCATTGATTTCTGATT 511 501 649 Antisense
TGGGCCGATGAACTGGCTTATCACA 700 553 700 Antisense
TGAGAACCTGTTCTTTTTCGGTGCT 641 557 762 Antisense
AAACTCTCGCTGCTGCAGTTATTCA 375 127 806 Antisense
CTGGAGGCCAATGTCTTTCTTTAAA 144 241 870 Antisense
AAACTGGTCACTTCACTCAACTTAT 261 125 893 Antisense
GCGTCTCAATAGTCAAATCCAGTTC 570 291 947 Antisense
GTCAGCTCTTCTCCAAATATGTACT 620 465 988 Antisense
GATCCGGCTGGAAATTTCGAATCTC 283 417 1036 Antisense
Sequence Source Affymetrix Proprietary Database