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[190193_s_at] zinc carboxypeptidase

Description R11A5.7 /REP_DB=WormBase Gene ID /WP=CE20027 /TR=Q9XU75 /GB=CAB05602.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=zinc carboxypeptidase
Cluster 6grp_high1_10_10 > 43      6grp_total > 10      4grp_total > 48      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3393
1 2 3 4 range
A 32.3
(-3)
A 		1740.5
(1.2)
P 		2470.4
(3)
P 		180.8
(-2.6)
A 		2438
B 25.7
(-3)
A 		1962.7
(1.8)
P 		2450.4
(3)
P 		84.7
(-2.9)
A 		2425
C 56.6
(-3)
A 		1816.8
(0.1)
P 		3418.7
(3)
P 		138.5
(-2.9)
A 		3362
avr 38.2
(-3) 		1840
(0.9) 		2779.8
(3) 		134.7
(-2.8) 		2742

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1448
1 2 3 4 5 6 range
A 56.1
(-3)
A 		1504.4
(3)
P 		781.2
(0)
P 		888.8
(0.4)
P 		729.8
(-0.2)
P 		328.8
(-1.9)
P 		1448
B 98.9
(-3)
P 		1327.5
(3)
P 		646.8
(-0.3)
P 		1009.2
(1.4)
P 		730.4
(0.1)
P 		490.3
(-1.1)
P 		1229
C 101
(-3)
A 		1307.6
(3)
P 		804.3
(0.5)
P 		979.7
(1.4)
P 		715.4
(0.1)
P 		480.8
(-1.1)
P 		1207
avr 85.3
(-3) 		1379.8
(3) 		744.1
(0.1) 		959.2
(1.1) 		725.2
(-0) 		433.3
(-1.4) 		1295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1183
1 2 3 4 range
A 11.7
(-3)
A 		377.8
(0.5)
P 		645.8
(3)
P 		26.5
(-2.9)
A 		634
B 8.2
(-3)
A 		484.7
(2.1)
P 		567.8
(3)
P 		18
(-2.9)
A 		560
C 18.7
(-3)
A 		522.4
(-0.4)
P 		1191.5
(3)
P 		23.4
(-3)
A 		1173
avr 12.9
(-3) 		461.6
(0.4) 		801.7
(3) 		22.6
(-2.9) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 10.3
(-3)
A 		535
(3)
P 		170.1
(-1.2)
P 		225.4
(-0.5)
P 		220.2
(-0.6)
P 		80
(-2.2)
P 		525
B 34.4
(-3)
P 		441.9
(3)
P 		157.1
(-1.2)
P 		267.3
(0.4)
P 		296.8
(0.9)
P 		182.8
(-0.8)
P 		408
C 37.4
(-3)
A 		399
(3)
P 		204.7
(-0.2)
P 		197
(-0.4)
P 		231.5
(0.2)
P 		160.9
(-1)
P 		362
avr 27.4
(-3) 		458.6
(3) 		177.3
(-0.9) 		229.9
(-0.2) 		249.5
(0.1) 		141.2
(-1.4) 		431
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190193_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.415
Sequence Type Exemplar sequence
Representative Public ID R11A5.7 NCBI
Target Description R11A5.7 /REP_DB=WormBase Gene ID /WP=CE20027 /TR=Q9XU75 /GB=CAB05602.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=zinc carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059776(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059776 NCBI Caenorhabditis elegans R11A5.7 (R11A5.7) mRNA, complete cds. 10/11 A 
SNAP00000037587 ENSEMBL cdna:SNAP chromosome:CEL140:I:7876340:7883642:-1 10/11 None
GENEFINDER00000037593 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7880391:7883075:-1 10/11 None
R11A5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7880188:7883680:-1 gene:R11A5.7 10/11 None
R11A5.7.2 ENSEMBL cdna:known chromosome:CEL140:I:7880188:7883686:-1 gene:R11A5.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7880321-7883573(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc carboxypeptidase
Ensembl R11A5.7
Entrez Gene 172557 Entrez gene
SwissProt Q9XU75 EMBL-EBI
WormBase CE32478 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4180 carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05602 Hypothetical protein R11A5.7 [Caenorhabditis elegans] ref|NP_492177.2| R11A5.7 [Caenorhabditis elegans] 0.0
blast CAE63736 Hypothetical protein CBG08265 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9E-11
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 6.4E-41
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.9E-30
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 6.4E-41
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.9E-30
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.8E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.5E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.9E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9E-11
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 6.4E-41
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.9E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000037587 4 638-657,664-686,696-718,725-747
Sequence
Target Sequence 
>C. ELEGANS:190193_S_AT
gactgttggcatctcaagcagctggaagtactacaagaagtactacaacactcaaaactt
ccactacatctgtatcgacaacgaaggctcattgtacttttgccaatgtattgtttcagc
tacatcaccatccaagacaagtcgtcactttgatcgtttcacagctgacctgaattcatc
gactcgtgctcgtccaactcctccaatggctccgccaataatgtcaccatcgacggaatt
ttcaactacaacaactgaagaagaagatgtgacaggggtaattcgatcatcttcaatagc
ttcgagagcaactacatatggattcttcactgctacaaaaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGTTGGCATCTCAAGCAGCTGG 698 373 1515 Antisense
GTACTACAACACTCAAAACTTCCAC 669 457 1554 Antisense
AAACTTCCACTACATCTGTATCGAC 351 127 1569 Antisense
GTATTGTTTCAGCTACATCACCATC 154 453 1622 Antisense
ACATCACCATCCAAGACAAGTCGTC 637 103 1636 Antisense
CAAGTCGTCACTTTGATCGTTTCAC 399 183 1652 Antisense
GATCGTTTCACAGCTGACCTGAATT 702 415 1666 Antisense
GACCTGAATTCATCGACTCGTGCTC 239 383 1681 Antisense
TGGCTCCGCCAATAATGTCACCATC 602 543 1721 Antisense
GTCACCATCGACGGAATTTTCAACT 582 465 1737 Antisense
GGATTCTTCACTGCTACAAAACCAT 28 509 1834 Antisense
Sequence Source Affymetrix Proprietary Database