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[190192_s_at]

Description M110.5A /REP_DB=WormBase Gene ID /WP=CE23876 /TR=Q9U3A6 /GB=CAB54270.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=disabled-like protein
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 89      4grp_total > 17      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 988
1 2 3 4 range
A 398.8
(-3)
P 		587.7
(-1.6)
P 		615.6
(-1.4)
P 		1213.4
(3)
P 		815
B 422.5
(-3)
P 		608
(-1.8)
P 		526.8
(-2.3)
P 		1344.9
(3)
P 		922
C 356.9
(-3)
P 		577.4
(-1.5)
P 		427.7
(-2.5)
P 		1223
(3)
P 		866
avr 392.7
(-3) 		591
(-1.6) 		523.4
(-2.1) 		1260.4
(3) 		868

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 807
1 2 3 4 5 6 range
A 651.4
(1.6)
P 		345.1
(-3)
P 		433.1
(-1.7)
P 		355.3
(-2.8)
P 		748.8
(3)
P 		440.3
(-1.6)
P 		404
B 532.7
(-1.7)
P 		583.3
(-1.2)
P 		402.7
(-3)
P 		573.9
(-1.3)
P 		809.5
(1.1)
P 		1001.5
(3)
P 		599
C 194.2
(-3)
P 		635.3
(1)
P 		357.8
(-1.5)
P 		535.1
(0.1)
P 		378.2
(-1.3)
P 		861.4
(3)
P 		667
avr 459.4
(-2) 		521.2
(-1) 		397.9
(-3) 		488.1
(-1.5) 		645.5
(1) 		767.7
(3) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 145.2
(-0.9)
P 		127.6
(-3)
P 		160.9
(1)
P 		177.6
(3)
P 		50
B 134.7
(-2.5)
P 		150.2
(-2)
P 		122.1
(-3)
P 		286.6
(3)
P 		165
C 118.1
(-3)
P 		166
(0.3)
P 		149.1
(-0.9)
P 		206.2
(3)
P 		88
avr 132.7
(-3) 		147.9
(-2) 		144
(-2.3) 		223.5
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 120.1
(-1.7)
P 		122.7
(-1.6)
P 		94.3
(-2.8)
P 		90.1
(-3)
P 		225.9
(3)
P 		107.2
(-2.2)
P 		136
B 185.3
(-1.1)
P 		194.2
(-0.9)
P 		97.8
(-3)
P 		152
(-1.8)
P 		328.9
(2)
P 		373.4
(3)
P 		276
C 72
(-3)
P 		193.8
(0.4)
P 		91.1
(-2.5)
P 		107.6
(-2)
P 		122.4
(-1.6)
P 		288.3
(3)
P 		216
avr 125.8
(-1.8) 		170.2
(-0.2) 		94.4
(-3) 		116.6
(-2.2) 		225.7
(1.9) 		256.3
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190192_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3603
Sequence Type Exemplar sequence
Representative Public ID M110.5A NCBI
Target Description M110.5A /REP_DB=WormBase Gene ID /WP=CE23876 /TR=Q9U3A6 /GB=CAB54270.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=disabled-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063330(11), NM_063329(11), NM_063331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063330 NCBI Caenorhabditis elegans DAB (Drosophila disabled) homolog family member (dab-1) (dab-1) mRNA, complete cds. 11/11 None
NM_063329 NCBI Caenorhabditis elegans DAB (Drosophila disabled) homolog family member (dab-1) (dab-1) mRNA, complete cds. 11/11 None
NM_063331 NCBI Caenorhabditis elegans DAB (Drosophila disabled) homolog family member (dab-1) (dab-1) mRNA, complete cds. 11/11 None
SNAP00000006402 ENSEMBL cdna:SNAP chromosome:CEL140:II:8226253:8228548:1 11/11 None
GENEFINDER00000006407 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8225976:8228548:1 11/11 None
M110.5a.2 ENSEMBL cdna:known chromosome:CEL140:II:8226055:8228548:1 gene:M110.5 11/11 None
M110.5a.1 ENSEMBL cdna:known chromosome:CEL140:II:8226239:8229073:1 gene:M110.5 11/11 None
M110.5b ENSEMBL cdna:known chromosome:CEL140:II:8226253:8228548:1 gene:M110.5 11/11 None
M110.5c ENSEMBL cdna:known chromosome:CEL140:II:8226643:8228548:1 gene:M110.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8226029-8228193(+) 100.0 100.0
Public Domain and Genome References
Ensembl M110.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54270 Hypothetical protein M110.5a [Caenorhabditis elegans] ref|NP_495731.2| DAB (Drosophila disabled) homolog family member (dab-1) [Caenorhabditis elegans] 0.0
blast CAB54271 Hypothetical protein M110.5b [Caenorhabditis elegans] ref|NP_495730.2| DAB (Drosophila disabled) homolog family member (dab-1) [Caenorhabditis elegans] 0.0
blast CAB54272 Hypothetical protein M110.5c [Caenorhabditis elegans] ref|NP_495732.2| DAB (Drosophila disabled) homolog family member (dab-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 1.0E-22
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 1.0E-22
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 1.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006407 2 49-71,117-139
Sequence
Target Sequence 
>C. ELEGANS:190192_S_AT
actgtcccgacaaactgtgatgccttcggagcatcaccatttggagatcctttcgtagac
agcttcaacagtacagccacgtcaaatggaactgcaaatatgtctggaactcaagtgcca
tttggaggacttcaacttccacaagttcaacaaatgcagatgccaatggttcaaattcct
caacaatctcatcagaattggccaacatccggagctggatcatttgacgcttggggacaa
caacaacagcagcaacaaatgcaccatgctcatagtacacctgctttcggaacaaacgga
ttctcggatactaatccatttgcgtcggctttcaatactcaagctcgccaccaccacttc
caactgttgctccaacacaataccgtgatccattctctgtacattcctctgctattccaa
attcaaatattgattggactggaactgggactacgaaagagaatatggcaccatctacta
atatccaacaacagcagtcatcattgcatcacgccagcacttttgccaactttggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGTCCCGACAAACTGTGATGCCT 572 95 856 Antisense
TGCCTTCGGAGCATCACCATTTGGA 158 583 876 Antisense
GAGATCCTTTCGTAGACAGCTTCAA 268 397 899 Antisense
ACAGCTTCAACAGTACAGCCACGTC 695 107 914 Antisense
TGCTCATAGTACACCTGCTTTCGGA 266 579 1122 Antisense
TACTAATCCATTTGCGTCGGCTTTC 247 645 1164 Antisense
ATACCGTGATCCATTCTCTGTACAT 501 23 1235 Antisense
ATTCCTCTGCTATTCCAAATTCAAA 702 7 1258 Antisense
GGCACCATCTACTAATATCCAACAA 84 537 1322 Antisense
CAGCAGTCATCATTGCATCACGCCA 244 197 1347 Antisense
GCCAGCACTTTTGCCAACTTTGGAG 182 275 1368 Antisense
Sequence Source Affymetrix Proprietary Database