[Home] | [Total List]

[190191_at] reverse transcriptase

Description T14C1.2 /REP_DB=WormBase Gene ID /WP=CE06446 /TR=Q22486 /GB=CAA94617.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 2.8
(-2.9)
A 		2.6
(-3)
A 		2.2
(-3)
A 		64.5
(3)
A 		62
B 5.6
(-2.6)
A 		3.2
(-3)
A 		3.9
(-2.9)
A 		41.2
(3)
A 		38
C 2.1
(-3)
A 		3.7
(-2.8)
A 		1.8
(-3)
A 		71.4
(3)
A 		70
avr 3.5
(-2.9) 		3.2
(-2.9) 		2.6
(-3) 		59
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		2
(-3)
A 		33.3
(3)
A 		8.3
(-1.8)
A 		3.3
(-2.8)
A 		6.2
(-2.2)
A 		31
B 3
(-0.1)
A 		2.6
(-0.7)
A 		1.3
(-2.3)
A 		5.4
(3)
A 		0.8
(-3)
A 		1.4
(-2.2)
A 		5
C 1
(-3)
A 		1.9
(-1.2)
A 		2.1
(-0.8)
A 		4
(3)
A 		1.4
(-2.2)
A 		2.4
(-0.2)
A 		3
avr 2.3
(-2.7) 		2.2
(-2.8) 		12.2
(3) 		5.9
(-0.6) 		1.8
(-3) 		3.3
(-2.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-2.7)
A 		0.6
(-3)
A 		0.6
(-3)
A 		9.4
(3)
A 		9
B 1.8
(-2.3)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		8.8
(3)
A 		8
C 0.7
(-2.9)
A 		1.1
(-2.7)
A 		0.6
(-3)
A 		12
(3)
A 		11
avr 1.2
(-2.7) 		0.8
(-2.9) 		0.7
(-3) 		10.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.8)
A 		7.2
(3)
A 		2.1
(-1.6)
A 		1
(-2.6)
A 		1.5
(-2.1)
A 		7
B 1
(0.8)
A 		0.9
(0.3)
A 		0.3
(-3)
A 		1.4
(3)
A 		0.3
(-3)
A 		0.5
(-1.9)
A 		1
C 0.4
(-3)
A 		0.6
(-0)
A 		0.5
(-1.5)
A 		0.8
(3)
A 		0.5
(-1.5)
A 		0.8
(3)
A 		0
avr 0.6
(-3) 		0.7
(-2.7) 		2.7
(3) 		1.4
(-0.7) 		0.6
(-3) 		0.9
(-2.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17869
Sequence Type Exemplar sequence
Representative Public ID T14C1.2 NCBI
Target Description T14C1.2 /REP_DB=WormBase Gene ID /WP=CE06446 /TR=Q22486 /GB=CAA94617.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077998 NCBI Caenorhabditis elegans T14C1.2 (T14C1.2) mRNA, complete cds. 11/11 None
T14C1.2 ENSEMBL cdna:known chromosome:CEL140:X:14400316:14400585:-1 gene:T14C1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K07E8.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11181127-11181397(+) 92.96 92.96
chrII:664606-664875(+) 92.22 92.22
chrIV:11221042-11221296(+) 92.59 92.59
chrX:14400315-14400585(-) 100.0 100.0
chrII:3242747-3243017(-) 97.04 97.04
Public Domain and Genome References
Gene Title reverse transcriptase
Ensembl T14C1.2
Entrez Gene 188496 Entrez gene
SwissProt Q22486 EMBL-EBI
WormBase CE06446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94617 Hypothetical protein T14C1.2 [Caenorhabditis elegans] ref|NP_510399.1| T14C1.2 [Caenorhabditis elegans] 2.0E-44
blast AAA20617 Hypothetical protein F54D8.5 [Caenorhabditis elegans] ref|NP_498084.1| F54D8.5 [Caenorhabditis elegans] 3.0E-27
blast CAB05805 Hypothetical protein T09F5.7 [Caenorhabditis elegans] ref|NP_506741.1| T09F5.7 [Caenorhabditis elegans] 6.0E-26
Sequence
Target Sequence 
>C. ELEGANS:190191_AT
gaatgacccggactacttaacatctattcaacgaaatgagctattcggcctcgcttcgtt
agaaactcgactcaaaacaattgatagaaagtttgtttctaagcttttggcgcagaaagt
tgacatggacatcaaaaatttctttcaaataagtgaaactaacaaaacgcgaaccaaaac
taagttcatctggaaaaaatgcagaactaaaattaggagacatttcttcacaaacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGACCCGGACTACTTAACATCT 17 331 15 Antisense
GACCCGGACTACTTAACATCTATTC 532 379 19 Antisense
GACTACTTAACATCTATTCAACGAA 601 279 25 Antisense
CGAAATGAGCTATTCGGCCTCGCTT 218 247 46 Antisense
CGGCCTCGCTTCGTTAGAAACTCGA 513 241 60 Antisense
CTCGCTTCGTTAGAAACTCGACTCA 99 223 64 Antisense
TTCGTTAGAAACTCGACTCAAAACA 657 695 69 Antisense
GTTTGTTTCTAAGCTTTTGGCGCAG 229 451 105 Antisense
TTTGGCGCAGAAAGTTGACATGGAC 673 665 120 Antisense
ACGCGAACCAAAACTAAGTTCATCT 588 91 181 Antisense
TAGGAGACATTTCTTCACAAACAGA 226 651 228 Antisense
Sequence Source Affymetrix Proprietary Database