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[190190_s_at]

Description T12E12.4 /REP_DB=WormBase Gene ID /WP=CE13589 /TR=Q22428 /GB=AAB03118.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dyamin-like protein
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 67      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 519.5
(3)
P 		436.9
(-0.7)
P 		443.8
(-0.4)
P 		384.9
(-3)
P 		135
B 549.1
(-1.4)
P 		486.7
(-3)
P 		558.8
(-1.1)
P 		714.9
(3)
P 		228
C 600
(3)
P 		588.6
(2.6)
P 		524.8
(0.4)
P 		427.4
(-3)
P 		173
avr 556.2
(3) 		504.1
(-3) 		509.1
(-2.4) 		509.1
(-2.4) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 292.1
(-3)
P 		537.4
(2.4)
P 		293.6
(-3)
P 		437
(0.2)
P 		419.5
(-0.2)
P 		564
(3)
P 		272
B 433.2
(-0.5)
P 		406.5
(-1.2)
P 		569.7
(3)
P 		389.5
(-1.6)
P 		335.7
(-3)
P 		521.4
(1.8)
P 		234
C 662
(3)
P 		393.7
(-3)
P 		440.5
(-2)
P 		471.1
(-1.3)
P 		486.6
(-0.9)
P 		606.8
(1.8)
P 		268
avr 462.4
(-1.1) 		445.9
(-1.7) 		434.6
(-2.2) 		432.5
(-2.3) 		413.9
(-3) 		564.1
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 189.1
(3)
P 		94.8
(-1.3)
P 		116
(-0.3)
P 		56.3
(-3)
P 		133
B 175.1
(3)
P 		120.2
(-3)
P 		129.5
(-2)
P 		152.3
(0.5)
P 		55
C 198.6
(3)
P 		169.2
(1.6)
P 		182.9
(2.3)
P 		72.1
(-3)
P 		127
avr 187.6
(3) 		128.1
(-0.8) 		142.8
(0.1) 		93.6
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 53.8
(-3)
P 		191.1
(3)
P 		63.9
(-2.6)
P 		110.8
(-0.5)
P 		126.6
(0.2)
P 		137.3
(0.6)
P 		137
B 150.7
(0.1)
P 		135.3
(-0.9)
P 		138.3
(-0.7)
P 		103.2
(-3)
P 		136.4
(-0.8)
P 		194.4
(3)
P 		91
C 245.4
(3)
P 		120.1
(-2)
P 		112.1
(-2.3)
P 		94.7
(-3)
P 		157.5
(-0.5)
P 		203.1
(1.3)
P 		151
avr 150
(0.7) 		148.8
(0.7) 		104.8
(-2.8) 		102.9
(-3) 		140.2
(-0) 		178.3
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190190_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10655
Sequence Type Exemplar sequence
Representative Public ID T12E12.4 NCBI
Target Description T12E12.4 /REP_DB=WormBase Gene ID /WP=CE13589 /TR=Q22428 /GB=AAB03118.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=dyamin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028204(11), NM_171344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028204 NCBI Caenorhabditis elegans Dynamin Related Protein family member (drp-1) (drp-1) mRNA, complete cds. 11/11 None
NM_171344 NCBI Caenorhabditis elegans Dynamin Related Protein family member (drp-1) (drp-1) mRNA, complete cds. 11/11 A 
SNAP00000021913 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5538477:5541028:1 11/11 None
GENEFINDER00000021925 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5538477:5541028:1 11/11 None
T12E12.4b ENSEMBL cdna:known chromosome:CEL140:IV:5538477:5541320:1 gene:T12E12.4 11/11 None
T12E12.4a.1 ENSEMBL cdna:known chromosome:CEL140:IV:5538477:5541333:1 gene:T12E12.4 11/11 A 
T12E12.4a.2 ENSEMBL cdna:known chromosome:CEL140:IV:5538477:5541287:1 gene:T12E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5538482-5541066(+) 100.0 100.0
Public Domain and Genome References
Ensembl T12E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL56621 Dynamin related protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023375.1| Dynamin Related Protein family member (drp-1) [Caenorhabditis elegans] gb|AAD49861.1| dynamin-related protein [Caenorhabditis elegans] 0.0
blast AAL56622 Dynamin related protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_741403.2| Dynamin Related Protein family member (drp-1) [Caenorhabditis elegans] 0.0
blast T29559 hypothetical protein T12E12.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003130 EMBL-EBI Dynamin GTPase effector 4.6E-30
Pfam IPR000375 EMBL-EBI Dynamin central region 6.9E-121
Pfam IPR001401 EMBL-EBI Dynamin 3.0E-107
Pfam IPR003130 EMBL-EBI Dynamin GTPase effector 4.6E-30
Pfam IPR003130 EMBL-EBI Dynamin GTPase effector 4.6E-30
Sequence
Target Sequence 
>C. ELEGANS:190190_S_AT
tcttctcgacgatcggcatggtcgcagtagaaatcgacatgcatcaaccggagaaagagc
ggtcagtgctcatggagaacagcagctacaaccggtaccaggagttaatggtgtcgactt
gaacgctgttcttcaacaacaacagcagcaatcccagaaccaacgtgcttccaatggatt
ccttggattattcggcaacgccgctgccagcagcaagacgtccccacaagaaaagcaatc
agcaaattttttgccagaagtgccagagacgcaactaggaagaaagttgacaagtcgtga
acaaagagatgtcgctattatcgaacggcttattcgaaactatttcatcattgttcgtaa
gaatattcaggatagtgtgccgaaagctattatggcgttactggtcaattttgttagaga
caatttgcaatcggagctcgttcgtcagctgtacaaacccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCGACGATCGGCATGGTCGC 307 617 1560 Antisense
AGAAATCGACATGCATCAACCGGAG 277 73 1588 Antisense
CAGCTACAACCGGTACCAGGAGTTA 84 205 1642 Antisense
ATGGTGTCGACTTGAACGCTGTTCT 333 49 1667 Antisense
GAACCAACGTGCTTCCAATGGATTC 555 343 1716 Antisense
TCCTTGGATTATTCGGCAACGCCGC 294 229 1739 Antisense
GCAAGACGTCCCCACAAGAAAAGCA 470 319 1772 Antisense
GAGATGTCGCTATTATCGAACGGCT 464 395 1865 Antisense
GAAAGCTATTATGGCGTTACTGGTC 600 359 1941 Antisense
TTTGCAATCGGAGCTCGTTCGTCAG 679 667 1983 Antisense
CGTTCGTCAGCTGTACAAACCCGAC 602 245 1998 Antisense
Sequence Source Affymetrix Proprietary Database