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[190186_s_at] trehalase precursor

Description T05A12.2 /REP_DB=WormBase Gene ID /WP=CE04897 /TR=Q9GYK9 /GB=AAF98588.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=trehalase precursor
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 85      6grp_total > 48      4grp_total > 42      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 607
(-3)
P 		849.1
(3)
P 		766.7
(1)
P 		645.2
(-2.1)
P 		242
B 635.7
(-3)
P 		870
(3)
P 		690.1
(-1.6)
P 		681.4
(-1.8)
P 		234
C 556.3
(-3)
P 		785.2
(3)
P 		754.9
(2.2)
P 		640.8
(-0.8)
P 		229
avr 599.7
(-3) 		834.8
(3) 		737.2
(0.5) 		655.8
(-1.6) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 1148.4
(2.7)
P 		941.5
(1)
P 		435.1
(-3)
P 		643.3
(-1.3)
P 		692.7
(-0.9)
P 		1186.2
(3)
P 		751
B 970.1
(3)
P 		721.4
(0.1)
P 		460.9
(-3)
P 		687.7
(-0.3)
P 		774.2
(0.7)
P 		968
(3)
P 		509
C 956.5
(1.3)
P 		747.5
(-2.2)
P 		766.2
(-1.9)
P 		699.6
(-3)
P 		744.6
(-2.2)
P 		1058.4
(3)
P 		359
avr 1025
(2.5) 		803.5
(-0.1) 		554.1
(-3) 		676.9
(-1.6) 		737.2
(-0.9) 		1070.9
(3) 		517
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 221
(3)
P 		184.3
(1.3)
P 		200.4
(2)
P 		94.4
(-3)
P 		127
B 202.7
(1.9)
P 		214.9
(3)
P 		159.9
(-1.7)
P 		145.2
(-3)
P 		70
C 184.2
(-0.1)
P 		225.8
(1.6)
P 		263.1
(3)
P 		108
(-3)
P 		155
avr 202.6
(2.6) 		208.3
(3) 		207.8
(3) 		115.9
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 211.7
(-0.1)
P 		334.8
(3)
P 		94.8
(-3)
P 		163.1
(-1.3)
P 		209
(-0.1)
P 		288.8
(1.9)
P 		240
B 337.6
(2.4)
P 		240.1
(0.1)
P 		111.9
(-3)
P 		182.1
(-1.3)
P 		314.5
(1.9)
P 		361
(3)
P 		249
C 354.5
(3)
P 		228.1
(-0.5)
P 		195
(-1.5)
P 		140.7
(-3)
P 		240.9
(-0.2)
P 		354.3
(3)
P 		214
avr 301.3
(2) 		267.7
(1) 		133.9
(-3) 		162
(-2.2) 		254.8
(0.6) 		334.7
(3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190186_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8570
Sequence Type Exemplar sequence
Representative Public ID T05A12.2 NCBI
Target Description T05A12.2 /REP_DB=WormBase Gene ID /WP=CE04897 /TR=Q9GYK9 /GB=AAF98588.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=trehalase precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068657 NCBI Caenorhabditis elegans TREhalase family member (tre-2) (tre-2) mRNA, complete cds. 11/11 None
SNAP00000001128 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6876844:6879358:-1 11/11 None
GENEFINDER00000001133 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6876844:6883426:-1 11/11 None
T05A12.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:6876718:6882946:-1 gene:T05A12.2 11/11 None
T05A12.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:6876721:6879414:-1 gene:T05A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6876849-6879364(-) 100.0 100.0
Public Domain and Genome References
Gene Title trehalase precursor
Gene Symbol tre-2
Ensembl T05A12.2
Entrez Gene 177451 Entrez gene
SwissProt Q9GYK9 EMBL-EBI
WormBase CE04897 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5991 trehalose metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4555 alpha,alpha-trehalase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98588 Trehalase protein 2 [Caenorhabditis elegans] ref|NP_501058.1| TREhalase family member (tre-2) [Caenorhabditis elegans] emb|CAD54508.2| trehalase [Caenorhabditis elegans] 0.0
blast CAE61754 Hypothetical protein CBG05710 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001661 EMBL-EBI Glycoside hydrolase, family 37 1.0E-126
Pfam IPR001661 EMBL-EBI Glycoside hydrolase, family 37 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190186_S_AT
ggaaatcatgccacaagcttccacgacactaacttcttcccaatgtactgtgacagctat
catgaagatctcgactcacaagtggtagttgactatttgacaacatctggagccatcagc
ttccccggaggtattcctgtatccctagtgaattctggagaacaatgggattttccgaac
agttggccaccaactacttgggttcttcttgaaggattacgaaaagttggtcaagaagaa
ttagcattgagcttggtggagaaatgggtacagaagaacttcaatatgtggagaacaagt
ggaggaagaatgttcgaaaagtacaacgtagtctcaccatgcttcaaagtgaaaggaggt
ggtgaatacgtgatgcaagaaggattcggttggacaaacggcgtcattctagactttctc
aagaactacggatccaaaatccggtggcaagttgcagaatcctgtgaatgctgtgatgtc
acattatcacgtactcttatcaaaccaacatctcctgctccatcatcatcttcaactgct
cgcctctttgctagtgaactcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATCATGCCACAAGCTTCCACG 509 527 1147 Antisense
CACTAACTTCTTCCCAATGTACTGT 47 197 1173 Antisense
GAAGATCTCGACTCACAAGTGGTAG 408 337 1210 Antisense
ACAACATCTGGAGCCATCAGCTTCC 215 113 1246 Antisense
GGTATTCCTGTATCCCTAGTGAATT 175 503 1276 Antisense
TGGCCACCAACTACTTGGGTTCTTC 672 541 1330 Antisense
AAGTACAACGTAGTCTCACCATGCT 377 157 1465 Antisense
AACGGCGTCATTCTAGACTTTCTCA 385 143 1543 Antisense
GTCACATTATCACGTACTCTTATCA 422 465 1624 Antisense
TCTTATCAAACCAACATCTCCTGCT 141 617 1641 Antisense
CGCCTCTTTGCTAGTGAACTCACAC 101 257 1687 Antisense
Sequence Source Affymetrix Proprietary Database