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[190183_at] alcohol dehydrogenase

Description C55A6.4 /REP_DB=WormBase Gene ID /WP=CE09001 /TR=P90779 /GB=CAB02864.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_high_8_8 > 52      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 440.9
(2.9)
P 		449.1
(3)
P 		380.2
(1.9)
P 		85.3
(-3)
M 		364
B 259
(0.3)
P 		441.1
(3)
P 		379
(2.1)
P 		32.1
(-3)
A 		409
C 340.8
(2.4)
P 		341
(2.4)
P 		360.4
(3)
P 		177.7
(-3)
P 		183
avr 346.9
(1.8) 		410.4
(3) 		373.2
(2.3) 		98.4
(-3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 607
1 2 3 4 5 6 range
A 560.3
(1.8)
P 		582.4
(2)
P 		665.6
(3)
P 		421.9
(0.2)
P 		313.2
(-1.1)
P 		145.1
(-3)
P 		521
B 486.9
(0.4)
P 		662.7
(2.3)
P 		734.3
(3)
P 		370.5
(-0.8)
P 		297.7
(-1.5)
P 		154.3
(-3)
P 		580
C 479.9
(0.3)
P 		749.3
(3)
P 		533.3
(0.9)
P 		494.5
(0.5)
P 		256.5
(-1.9)
P 		142.8
(-3)
P 		607
avr 509
(1.2) 		664.8
(3) 		644.4
(2.8) 		429
(0.3) 		289.1
(-1.4) 		147.4
(-3) 		517
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 160.5
(3)
P 		97.5
(0.4)
P 		99.4
(0.5)
P 		12.5
(-3)
M 		148
B 82.6
(1.5)
P 		108.9
(3)
P 		87.8
(1.8)
P 		6.8
(-3)
A 		102
C 112.8
(2.2)
P 		98
(1.3)
P 		125.6
(3)
P 		30
(-3)
P 		96
avr 118.6
(3) 		101.5
(2) 		104.3
(2.2) 		16.4
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 103.3
(-0.6)
P 		207.1
(3)
P 		145
(0.8)
P 		107
(-0.5)
P 		94.5
(-0.9)
P 		35.3
(-3)
P 		172
B 169.4
(1.1)
P 		220.6
(3)
P 		178.3
(1.4)
P 		98.1
(-1.5)
P 		121
(-0.7)
P 		57.5
(-3)
P 		163
C 177.9
(1.3)
P 		228.6
(3)
P 		135.7
(-0.1)
P 		99.4
(-1.3)
P 		83
(-1.8)
P 		47.8
(-3)
P 		181
avr 150.2
(0.6) 		218.8
(3) 		153
(0.7) 		101.5
(-1.1) 		99.5
(-1.2) 		46.9
(-3) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13782
Sequence Type Exemplar sequence
Representative Public ID C55A6.4 NCBI
Target Description C55A6.4 /REP_DB=WormBase Gene ID /WP=CE09001 /TR=P90779 /GB=CAB02864.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073521 NCBI Caenorhabditis elegans C55A6.4 (C55A6.4) mRNA, complete cds. 11/11 None
SNAP00000029773 ENSEMBL cdna:SNAP chromosome:CEL140:V:11519292:11520350:-1 11/11 None
GENEFINDER00000029778 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11519292:11520350:-1 11/11 None
C55A6.4 ENSEMBL cdna:known chromosome:CEL140:V:11519292:11520350:-1 gene:C55A6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11519291-11520350(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol dehydrogenase
Ensembl C55A6.4
Entrez Gene 183833 Entrez gene
SwissProt P90779 EMBL-EBI
WormBase CE09001 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02864 Hypothetical protein C55A6.4 [Caenorhabditis elegans] ref|NP_505922.1| C55A6.4 [Caenorhabditis elegans] 1.0E-126
blast CAB02866 Hypothetical protein C55A6.6 [Caenorhabditis elegans] ref|NP_505920.1| C55A6.6 [Caenorhabditis elegans] 3.0E-93
blast CAB02865 Hypothetical protein C55A6.5 [Caenorhabditis elegans] ref|NP_505921.1| C55A6.5 [Caenorhabditis elegans] pdb|1YO6|F Chain F, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|E Chain E, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|D Chain D, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|C Chain C, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|B Chain B, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.4E-18
Sequence
Target Sequence 
>C. ELEGANS:190183_AT
attagtgatcctcgtgttactgctctccaattggaagttacttgtgataaatcaatggat
acttttgtctcaaaagttgaagaaattgttggatctgatggacttaacctgcttgtcaat
aatgcgggaaacgcggtggattatccatgtaaagcgaaaccaaaccgtgcactgtttgcc
gagcagctgaatgtgaacacgaccagtgtggttattctcactcaaaaactgatgccactt
ctcatcaaggcatcctcaaaagtgtctggagatcaactttccgcttcacgtgctgctgta
gtcactatctcatctggacttgcatcaatgactgattttgccacaggaggccatgctcca
aatgcatttgcttacagaattagcaaagctgccattaatatgtttggtagagctcttgca
aatgatatgaaagatgatcatattctggtagccagtattggtcctggatgggtgaagact
gatatgggaggagagaaggcccttttgacggttgaacaatcaactgccgaactagtggcc
agcttcaacaagctcaacaattctcacaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGTGATCCTCGTGTTACTGCTC 207 13 154 Antisense
GTGTTACTGCTCTCCAATTGGAAGT 275 485 167 Antisense
GATCTGATGGACTTAACCTGCTTGT 314 419 245 Antisense
CCAAACCGTGCACTGTTTGCCGAGC 405 275 313 Antisense
GCCGAGCAGCTGAATGTGAACACGA 379 285 331 Antisense
GACCAGTGTGGTTATTCTCACTCAA 590 383 354 Antisense
TGCCACTTCTCATCAAGGCATCCTC 150 587 386 Antisense
TTTGCCACAGGAGGCCATGCTCCAA 516 667 490 Antisense
GAGAGAAGGCCCTTTTGACGGTTGA 74 393 644 Antisense
AACTGCCGAACTAGTGGCCAGCTTC 374 141 675 Antisense
AACAAGCTCAACAATTCTCACAATG 279 135 700 Antisense
Sequence Source Affymetrix Proprietary Database