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[190179_at] nuclear factor 5 like

Description C25A1.2 /REP_DB=WormBase Gene ID /WP=CE08367 /TR=O17593 /GB=CAB02761.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nuclear factor 5 like
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 27      6grp_total > 04      4grp_total > 29      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 114.3
(2.2)
P 		125.2
(3)
P 		45.7
(-3)
A 		87.5
(0.2)
A 		80
B 101.6
(1.2)
P 		76.5
(-1.1)
P 		57.1
(-3)
P 		120
(3)
P 		63
C 134.6
(3)
P 		106.1
(0.6)
P 		64.8
(-3)
P 		109.3
(0.8)
P 		70
avr 116.8
(3) 		102.6
(1.6) 		55.9
(-3) 		105.6
(1.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 102.3
(3)
P 		80.5
(0.7)
P 		73.9
(0)
P 		67
(-0.7)
P 		63
(-1.2)
A 		45.5
(-3)
P 		57
B 102.1
(3)
P 		79.7
(0.8)
P 		79.6
(0.8)
P 		54.8
(-1.6)
A 		39.9
(-3)
P 		41.1
(-2.9)
A 		62
C 88.1
(2.5)
P 		69.2
(1)
P 		53.3
(-0.2)
A 		94.2
(3)
A 		57.3
(0.1)
P 		17.7
(-3)
A 		77
avr 97.5
(3) 		76.5
(1) 		68.9
(0.3) 		72
(0.6) 		53.4
(-1.2) 		34.8
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 41.6
(3)
P 		27.2
(0.1)
P 		11.9
(-3)
A 		12.8
(-2.8)
A 		30
B 32.4
(3)
P 		18.9
(-1.2)
P 		13.2
(-3)
P 		25.6
(0.9)
P 		19
C 44.6
(3)
P 		30.5
(-0.2)
P 		22.6
(-2)
P 		18.4
(-3)
P 		26
avr 39.5
(3) 		25.5
(-0.6) 		15.9
(-3) 		18.9
(-2.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.9
(-0.3)
P 		28.6
(3)
P 		16.1
(-1.3)
P 		17
(-1)
P 		19
(-0.3)
A 		11.1
(-3)
P 		18
B 35.5
(3)
P 		26.5
(0.4)
P 		19.3
(-1.6)
P 		14.5
(-3)
A 		16.2
(-2.5)
P 		15.3
(-2.8)
A 		21
C 32.6
(3)
P 		21.1
(0.4)
P 		13.6
(-1.3)
A 		18.9
(-0.1)
A 		18.5
(-0.2)
P 		5.9
(-3)
A 		27
avr 29
(3) 		25.4
(1.8) 		16.3
(-1.2) 		16.8
(-1) 		17.9
(-0.7) 		10.8
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1331
Sequence Type Exemplar sequence
Representative Public ID C25A1.2 NCBI
Target Description C25A1.2 /REP_DB=WormBase Gene ID /WP=CE08367 /TR=O17593 /GB=CAB02761.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nuclear factor 5 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060275 NCBI Caenorhabditis elegans ForKHead transcription factor family member (fkh-10) (fkh-10) mRNA, complete cds. 11/11 None
SNAP00000000653 ENSEMBL cdna:SNAP chromosome:CEL140:I:10171864:10173243:-1 11/11 None
GENEFINDER00000000667 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10171864:10173243:-1 11/11 None
C25A1.2 ENSEMBL cdna:known chromosome:CEL140:I:10171864:10173417:-1 gene:C25A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10171794-10173348(-) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear factor 5 like
Gene Symbol fkh-10
Ensembl C25A1.2
Entrez Gene 182874 Entrez gene
SwissProt O17593 EMBL-EBI
WormBase CE08367 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02761 Hypothetical protein C25A1.2 [Caenorhabditis elegans] ref|NP_492676.1| ForKHead transcription factor family member (fkh-10) [Caenorhabditis elegans] 1.0E-114
blast CAB02761 Hypothetical protein C25A1.2 [Caenorhabditis elegans] ref|NP_492676.1| ForKHead transcription factor family member (fkh-10) [Caenorhabditis elegans] 2.0E-91
blast CAE66859 Hypothetical protein CBG12232 [Caenorhabditis briggsae] 2.0E-74
blast CAE66859 Hypothetical protein CBG12232 [Caenorhabditis briggsae] 3.0E-74
blast AAY51596 IP01059p [Drosophila melanogaster] gb|AAF59407.1| CG11152-PA [Drosophila melanogaster] ref|NP_651951.1| CG11152-PA [Drosophila melanogaster] 5.0E-40
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 2.00000003600502E-35
Pfam IPR001766 EMBL-EBI Fork head transcription factor 4.8E-48
Pfam IPR001766 EMBL-EBI Fork head transcription factor 4.8E-48
Sequence
Target Sequence 
>C. ELEGANS:190179_AT
tctatcatcctcaaatcattcactcaaagattcaccatttccaatgattcctttgtcttt
tgatacttcaattatgagcccaacagaatgtcaacagccaaaaccacaacattcatatat
tggacttattgcaatggcaattctttcatcaccacaaaagaaaatggttctagcagaggt
atacgagtggataatgaatgaatatccgtacttcagaagtcgtggagctggctggaggaa
ttcaatcagacacaatttatcattgaatgattgttttgtaaaagccggtagagctgcaaa
tgggaagggtcattactgggcagtccatcctgcatgtgtcaaagatttcgaacgtggaga
cttcagacgtcgtcgtgcacaacgaaaagttcgccgtcatatggggctgcaggttgagga
cggagattcatcagatgaggaaggttcaccaggttctgatccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATCATCCTCAAATCATTCACTC 169 615 144 Antisense
GATTCCTTTGTCTTTTGATACTTCA 546 433 189 Antisense
TCAACAGCCAAAACCACAACATTCA 71 631 234 Antisense
GCAATGGCAATTCTTTCATCACCAC 551 319 274 Antisense
GAAGTCGTGGAGCTGGCTGGAGGAA 211 335 359 Antisense
GGAAGGGTCATTACTGGGCAGTCCA 157 533 446 Antisense
GGCAGTCCATCCTGCATGTGTCAAA 228 537 462 Antisense
GAGACTTCAGACGTCGTCGTGCACA 587 393 500 Antisense
AAGTTCGCCGTCATATGGGGCTGCA 164 157 530 Antisense
TGGGGCTGCAGGTTGAGGACGGAGA 443 553 545 Antisense
AGGTTCACCAGGTTCTGATCCATCA 237 57 585 Antisense
Sequence Source Affymetrix Proprietary Database