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[190178_s_at] sulfate transporter

Description F14D12.5 /REP_DB=WormBase Gene ID /WP=CE27963 /TR=Q19447 /GB=AAA82335.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sulfate transporter
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 53      4grp_high_8_8 > 18      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 30      6grp_cgc > 66      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 586.2
(3)
P 		294.4
(-1.9)
P 		228.2
(-3)
P 		448.4
(0.7)
P 		358
B 534.4
(3)
P 		253.3
(-1.6)
P 		171.5
(-3)
P 		469.8
(1.9)
P 		363
C 553.3
(3)
P 		315
(-1.5)
P 		233.2
(-3)
P 		480.9
(1.6)
P 		320
avr 558
(3) 		287.6
(-1.7) 		211
(-3) 		466.4
(1.4) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 225
(-3)
P 		330
(0)
P 		418.4
(2.5)
P 		434.7
(3)
P 		297
(-0.9)
P 		408.8
(2.3)
P 		210
B 351.6
(-2)
P 		330.4
(-3)
P 		360.6
(-1.6)
P 		358.1
(-1.7)
P 		394.5
(-0.1)
P 		461.6
(3)
P 		131
C 314.6
(-2)
P 		362.1
(0)
P 		431.3
(3)
P 		416.4
(2.4)
P 		334.1
(-1.2)
P 		292.3
(-3)
P 		139
avr 297.1
(-3) 		340.8
(-0.5) 		403.4
(3) 		403.1
(3) 		341.9
(-0.5) 		387.6
(2.1) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 213.4
(3)
P 		63.9
(-2.8)
P 		59.7
(-3)
P 		65.6
(-2.8)
P 		154
B 170.4
(3)
P 		62.6
(-1.9)
P 		39.7
(-3)
P 		100.1
(-0.2)
P 		131
C 183.2
(3)
P 		90.6
(-2.4)
P 		81.3
(-3)
P 		81.1
(-3)
P 		102
avr 189
(3) 		72.4
(-2.4) 		60.2
(-3) 		82.3
(-2) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 41.5
(-3)
P 		117.4
(3)
P 		91.1
(0.9)
P 		110.3
(2.4)
P 		89.6
(0.8)
P 		99.5
(1.6)
P 		76
B 122.3
(-0.5)
P 		110
(-1.4)
P 		87.6
(-3)
P 		94.8
(-2.5)
P 		160.3
(2.2)
P 		172.1
(3)
P 		85
C 116.6
(3)
P 		110.5
(1.9)
P 		109.8
(1.8)
P 		83.7
(-3)
P 		108.1
(1.4)
P 		97.8
(-0.4)
P 		33
avr 93.5
(-3) 		112.6
(0.9) 		96.2
(-2.5) 		96.3
(-2.4) 		119.3
(2.2) 		123.1
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190178_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17150
Sequence Type Exemplar sequence
Representative Public ID F14D12.5 NCBI
Target Description F14D12.5 /REP_DB=WormBase Gene ID /WP=CE27963 /TR=Q19447 /GB=AAA82335.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sulfate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076543 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-2) (sulp-2) mRNA, complete cds. 11/11 None
SNAP00000023050 ENSEMBL cdna:SNAP chromosome:CEL140:X:5595895:5598006:-1 11/11 None
GENEFINDER00000023059 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5595895:5599154:-1 11/11 None
F14D12.5 ENSEMBL cdna:known chromosome:CEL140:X:5595751:5599289:-1 gene:F14D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5595894-5599222(-) 100.0 100.0
Public Domain and Genome References
Gene Title sulfate transporter
Gene Symbol sulp-2
Ensembl F14D12.5
Entrez Gene 180828 Entrez gene
SwissProt Q19447 EMBL-EBI
WormBase CE27963 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25542.1.S1_AT similar to solute carrier family 26, member 1 isoform a cfa
HG-U133_PLUS_2:220733_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-U133A:220733_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-FOCUS:220733_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-U133A_2:220733_AT solute carrier family 26 (sulfate transporter), member 1 hs
U133_X3P:G11545740_3P_AT solute carrier family 26 (sulfate transporter), member 1 hs
U133_X3P:HS2.302008.1.S1_3P_AT solute carrier family 26 (sulfate transporter), member 1 hs
U133_X3P:HS.89560.0.S1_3P_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-U133_PLUS_2:1552843_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-U133A_2:205058_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-U133_PLUS_2:205058_AT solute carrier family 26 (sulfate transporter), member 1 hs
HG-U133A:205058_AT solute carrier family 26 (sulfate transporter), member 1 hs
MU11KSUBB:MSA.32018.0_S_AT solute carrier family 26 (sulfate transporter), member 1 mm
MG-U74AV2:94797_AT solute carrier family 26 (sulfate transporter), member 1 mm
MOE430A:1451239_A_AT solute carrier family 26 (sulfate transporter), member 1 mm
MOUSE430A_2:1451239_A_AT solute carrier family 26 (sulfate transporter), member 1 mm
MOUSE430_2:1451239_A_AT solute carrier family 26 (sulfate transporter), member 1 mm
MOE430B:1458327_X_AT solute carrier family 26 (sulfate transporter), member 1 mm
MOUSE430_2:1458327_X_AT solute carrier family 26 (sulfate transporter), member 1 mm
MU19KSUBC:TC36567_AT Solute carrier family 26 (sulfate transporter), member 1, mRNA (cDNA clone MGC:29387 IMAGE:5055098) mm
RG-U34A:L23413_AT solute carrier family 26 (sulfate transporter), member 1 rn
RAE230A:1368600_AT solute carrier family 26 (sulfate transporter), member 1 rn
RAT230_2:1368600_AT solute carrier family 26 (sulfate transporter), member 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8272 sulfate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8271 sulfate porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82335 Hypothetical protein F14D12.5 [Caenorhabditis elegans] ref|NP_508944.1| SULfate Permease family member (sulp-2) [Caenorhabditis elegans] gb|AAX34420.1| anion transporter SULP-2 [Caenorhabditis elegans] 0.0
blast CAE68768 Hypothetical protein CBG14706 [Caenorhabditis briggsae] 0.0
blast AAA82335 Hypothetical protein F14D12.5 [Caenorhabditis elegans] ref|NP_508944.1| SULfate Permease family member (sulp-2) [Caenorhabditis elegans] gb|AAX34420.1| anion transporter SULP-2 [Caenorhabditis elegans] 1.0E-171
blast CAE72225 Hypothetical protein CBG19337 [Caenorhabditis briggsae] 2.0E-86
blast CAE72225 Hypothetical protein CBG19337 [Caenorhabditis briggsae] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 3.1E-28
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.6E-73
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 3.1E-28
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 3.1E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508944.1 9 63-85,100-122,143-165,175-194,232-251,311-330,351-373,402-424,445-477
F14D12.5 9 63-85,100-122,143-165,175-194,232-251,311-330,351-373,402-424,445-477
SNAP00000023050 3 46-68,97-119,140-172
GENEFINDER00000023059 9 55-77,92-114,135-157,167-186,224-243,306-328,349-371,400-422,443-475
Sequence
Target Sequence 
>C. ELEGANS:190178_S_AT
ggatttggatcattactgctgttgtgactctaagttccgatattgcgcaaggggtagctg
ctggaattttcacggcaatttttacaattgcaatacaatctcagcaacctacgattaaac
ttcttgggcaaatccgaccaaatgattttagaccaatgaatcactatagcttggcaaagg
aaacatcgttccgaatcattagatttgatgcaccactgattttcgcaaacgttgagaagt
ttctcgataacgttcgcgattcgacatcagccaccacaaaaaagagaagcgcgagttgcg
attcccaagaggatattgagtggagtgcaatcattcttgactgccacacttggatttata
cggattctatggggattgctgcggtgaagcaaattaatgaagaattacgacaaattcgta
tactcctgttgtttgcaaatctgaagtcatcactccgacgacaatatggaaatgctggcc
tgattggagaagggaatattggaagaaatcaaatgtatccctccattcaagatgcgctgg
attctgctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTGGATCATTACTGCTGTTGT 146 511 1343 Antisense
GTGACTCTAAGTTCCGATATTGCGC 129 483 1366 Antisense
GGGTAGCTGCTGGAATTTTCACGGC 1 497 1394 Antisense
GCACCACTGATTTTCGCAAACGTTG 110 315 1552 Antisense
TAACGTTCGCGATTCGACATCAGCC 174 639 1590 Antisense
GAAGCGCGAGTTGCGATTCCCAAGA 495 343 1628 Antisense
GTGCAATCATTCTTGACTGCCACAC 278 481 1667 Antisense
GATTCTATGGGGATTGCTGCGGTGA 296 431 1705 Antisense
ATTCGTATACTCCTGTTGTTTGCAA 588 9 1756 Antisense
AATGTATCCCTCCATTCAAGATGCG 193 165 1854 Antisense
TCAAGATGCGCTGGATTCTGCTCAC 82 633 1869 Antisense
Sequence Source Affymetrix Proprietary Database