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[190176_at]

Description C07A12.1 /REP_DB=WormBase Gene ID /WP=CE25763 /GEN=ham-2 /GB=AAK39155.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 4grp_high_8_8 > 02      6grp_total > 24      4grp_total > 14      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 370.4
(1.7)
P 		110
(-2.8)
P 		100.7
(-3)
A 		445.5
(3)
P 		345
B 271.3
(-0.3)
P 		111.1
(-3)
A 		164
(-2.1)
P 		461.8
(3)
P 		351
C 416.8
(2.3)
P 		142.4
(-2.1)
P 		88.4
(-3)
P 		457.3
(3)
P 		369
avr 352.8
(1.2) 		121.2
(-2.9) 		117.7
(-3) 		454.9
(3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 175.4
(1.9)
P 		193.4
(3)
P 		183.2
(2.4)
P 		145.9
(0.2)
M 		91.4
(-3)
A 		119.2
(-1.4)
P 		102
B 166.7
(-0.5)
P 		261.2
(3)
P 		121.5
(-2.2)
P 		163.4
(-0.6)
P 		98.9
(-3)
A 		148.2
(-1.2)
P 		162
C 253.6
(3)
P 		206.6
(1.2)
P 		252.9
(3)
P 		107.1
(-2.5)
P 		109.7
(-2.4)
A 		92.7
(-3)
A 		161
avr 198.6
(1.9) 		220.4
(3) 		185.9
(1.3) 		138.8
(-1.1) 		100
(-3) 		120
(-2) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 134.9
(3)
P 		23.9
(-3)
P 		26.3
(-2.9)
A 		65.2
(-0.8)
P 		111
B 86.5
(2)
P 		27.4
(-3)
A 		38
(-2.1)
P 		98.4
(3)
P 		71
C 138
(3)
P 		40.9
(-2.4)
P 		30.8
(-3)
P 		77.1
(-0.4)
P 		107
avr 119.8
(3) 		30.7
(-3) 		31.7
(-2.9) 		80.2
(0.3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 32.3
(-2.3)
P 		68.8
(3)
P 		39.9
(-1.2)
P 		37
(-1.6)
M 		27.6
(-3)
A 		29
(-2.8)
P 		41
B 58
(-0)
P 		86.9
(3)
P 		29.5
(-3)
P 		43.3
(-1.6)
P 		40.2
(-1.9)
A 		55.2
(-0.3)
P 		57
C 94
(3)
P 		63
(0.4)
P 		64.4
(0.6)
P 		21.5
(-3)
P 		35.5
(-1.8)
A 		31
(-2.2)
A 		73
avr 61.4
(1.2) 		72.9
(3) 		44.6
(-1.4) 		33.9
(-3) 		34.4
(-2.9) 		38.4
(-2.3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16812
Sequence Type Exemplar sequence
Representative Public ID C07A12.1 NCBI
Target Description C07A12.1 /REP_DB=WormBase Gene ID /WP=CE25763 /GEN=ham-2 /GB=AAK39155.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029193(11), NM_001029192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029193 NCBI Caenorhabditis elegans HSN Abnormal Migration family member (ham-2) (ham-2) mRNA, complete cds. 11/11 None
NM_001029192 NCBI Caenorhabditis elegans HSN Abnormal Migration family member (ham-2) (ham-2) mRNA, complete cds. 11/11 None
GENEFINDER00000025338 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4557134:4558783:1 11/11 None
SNAP00000025325 ENSEMBL cdna:SNAP chromosome:CEL140:X:4557203:4558783:1 11/11 None
C07A12.1b ENSEMBL cdna:known chromosome:CEL140:X:4554530:4558827:1 gene:C07A12.1 11/11 None
C07A12.1a ENSEMBL cdna:known chromosome:CEL140:X:4554530:4559358:1 gene:C07A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4554530-4558784(+) 100.0 100.0
Public Domain and Genome References
Ensembl C07A12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ65209 Hsn abnormal migration protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024364.1| HSN Abnormal Migration family member (ham-2) [Caenorhabditis elegans] 0.0
blast AAK39155 Hsn abnormal migration protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024363.1| HSN Abnormal Migration family member (ham-2) [Caenorhabditis elegans] 0.0
blast T34095 zinc finger protein ham-2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:190176_AT
ggcccttaatctggcagcgcaacaaacaccgtccaaagattccatccagtcttctaatat
tagcgattatgacgacttagaagtgcagacaactgaagaagacatcaaatttgaagtgga
aagcagtgatgtcagccctcggtcagtcattgtcaagactgaaccaactttcaaaagaga
actggaacacgatgctgatattgatgtggaaggcgatgatggcgaaccaccattgaaaat
gacgattgatgacaaaaacatccacatttcccatgatcagccttctccaacggtttcgga
ttctcacatcagtggtggatcgtctagtcattcgggcgaaagtttgaaatgctttgattg
tcaggtagccagagggaagcttgttgcagttgaggacaaatgtcgtgcctatgaaaagac
cattagagagttgcaagttcaagtggatttcctccgcaaaattcaaccgaatccgatgcc
acccgtgatgctgcctcctccgatgatgcctatgccatctccagggccgaacaatctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCCTTAATCTGGCAGCGCAACAA 161 543 633 Antisense
CAAACACCGTCCAAAGATTCCATCC 542 191 655 Antisense
TTCCATCCAGTCTTCTAATATTAGC 125 701 672 Antisense
TGGAAAGCAGTGATGTCAGCCCTCG 419 547 749 Antisense
GCCCTCGGTCAGTCATTGTCAAGAC 632 285 767 Antisense
GGAAGGCGATGATGGCGAACCACCA 26 533 840 Antisense
AAAAACATCCACATTTCCCATGATC 103 131 886 Antisense
AACGGTTTCGGATTCTCACATCAGT 72 145 921 Antisense
TGGTGGATCGTCTAGTCATTCGGGC 53 553 945 Antisense
GGATTTCCTCCGCAAAATTCAACCG 150 509 1077 Antisense
CATCTCCAGGGCCGAACAATCTATT 55 213 1148 Antisense
Sequence Source Affymetrix Proprietary Database