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[190175_at] GTP-binding protein

Description W09G12.5 /REP_DB=WormBase Gene ID /WP=CE28419 /TR=O45196 /GB=AAC04451.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_total > 29      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 52.6
(3)
A 		14
(-3)
A 		23.9
(-1.5)
A 		21.1
(-1.9)
A 		39
B 32.2
(1.2)
A 		6
(-2.5)
A 		2.4
(-3)
A 		44.5
(3)
A 		42
C 66.1
(3)
A 		46.3
(-0.4)
A 		31.1
(-3)
A 		48.2
(-0.1)
A 		35
avr 50.3
(3) 		22.1
(-2.4) 		19.1
(-3) 		37.9
(0.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 40.6
(3)
A 		21.2
(-2)
A 		17.2
(-3)
A 		22.8
(-1.6)
A 		35
(1.6)
A 		29.7
(0.2)
A 		23
B 39.5
(3)
A 		19.1
(-0.4)
A 		3.9
(-3)
A 		8.7
(-2.2)
A 		13.1
(-1.4)
A 		17.4
(-0.7)
A 		36
C 30.3
(1.1)
A 		9.6
(-3)
A 		39.9
(3)
A 		19.1
(-1.1)
A 		25.4
(0.1)
A 		31.7
(1.4)
A 		30
avr 36.8
(3) 		16.6
(-3) 		20.3
(-1.9) 		16.9
(-2.9) 		24.5
(-0.7) 		26.3
(-0.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 19.2
(3)
A 		3
(-3)
A 		6.2
(-1.8)
A 		3.1
(-3)
A 		16
B 10.3
(3)
A 		1.5
(-2.4)
A 		0.5
(-3)
A 		9.5
(2.5)
A 		10
C 21.9
(3)
A 		13.3
(-0.7)
A 		10.8
(-1.8)
A 		8.1
(-3)
A 		14
avr 17.1
(3) 		5.9
(-2.9) 		5.8
(-3) 		6.9
(-2.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.5
(0.3)
A 		7.5
(0.3)
A 		3.8
(-3)
A 		5.8
(-1.2)
A 		10.6
(3)
A 		7.2
(0)
A 		7
B 13.7
(3)
A 		6.3
(-0.5)
A 		1
(-3)
A 		2.3
(-2.4)
A 		5.3
(-1)
A 		6.5
(-0.4)
A 		13
C 11.2
(3)
A 		2.9
(-3)
A 		10.1
(2.2)
A 		3.8
(-2.3)
A 		8.2
(0.8)
A 		10.6
(2.6)
A 		8
avr 10.8
(3) 		5.6
(-1.6) 		5
(-2.1) 		4
(-3) 		8
(0.5) 		8.1
(0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10553
Sequence Type Exemplar sequence
Representative Public ID W09G12.5 NCBI
Target Description W09G12.5 /REP_DB=WormBase Gene ID /WP=CE28419 /TR=O45196 /GB=AAC04451.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067658(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067658 NCBI Caenorhabditis elegans W09G12.5 (W09G12.5) mRNA, complete cds. 10/11 None
SNAP00000022148 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1233532:1234830:-1 11/11 None
W09G12.5 ENSEMBL cdna:known chromosome:CEL140:IV:1232901:1234734:-1 gene:W09G12.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1233537-1234806(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Ensembl W09G12.5
Entrez Gene 3565048 Entrez gene
SwissProt Q965J6 EMBL-EBI
WormBase CE28419 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOUSE430_2:1427570_AT similar to signal recognition particle receptor (docking protein) mm
MOUSE430A_2:1427570_AT similar to signal recognition particle receptor (docking protein) mm
MOE430A:1427570_AT similar to signal recognition particle receptor (docking protein) mm
MG-U74BV2:164461_F_AT similar to signal recognition particle receptor (docking protein) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6614 SRP-dependent cotranslational protein targeting to membrane inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5786 signal recognition particle (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500059 W09G12.5 [Caenorhabditis elegans] gb|AAK84581.1| Hypothetical protein W09G12.5 [Caenorhabditis elegans] 1.0E-58
blast CAE68264 Hypothetical protein CBG13941 [Caenorhabditis briggsae] 3.0E-57
blast CAE68264 Hypothetical protein CBG13941 [Caenorhabditis briggsae] 4.0E-57
blast EAL41473 ENSANGP00000027496 [Anopheles gambiae str. PEST] ref|XP_564031.1| ENSANGP00000027496 [Anopheles gambiae str. PEST] 2.0E-55
blast EAL41473 ENSANGP00000027496 [Anopheles gambiae str. PEST] ref|XP_564031.1| ENSANGP00000027496 [Anopheles gambiae str. PEST] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000897 EMBL-EBI GTP-binding signal recognition particle (SRP54) G-domain 1.7E-16
Pfam IPR000897 EMBL-EBI GTP-binding signal recognition particle (SRP54) G-domain 4.1E-33
Sequence
Target Sequence 
>C. ELEGANS:190175_AT
ggatactgccggccgaatgcaggataatgaaccgctgatgagagagttggccaagctaat
ccgagtgaatgagcccgacttggtgttgtttgtcggcgaggcgcttgtcggaaatgaggc
agtcgatcaactggtgaaattcaatgaagctctggcaaatcacgcttcacccgggcaaaa
gccccgtctaatcgatggaattgtgctcacaaagtttgatacaattgatgataaagttgg
agcagctgtatcaatgacatatatcactggacaaccgattgtattcgttggatgtggtca
aacgtattcggatctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTGCCGGCCGAATGCAGGAT 580 509 63 Antisense
GAACCGCTGATGAGAGAGTTGGCCA 45 347 91 Antisense
GAGTTGGCCAAGCTAATCCGAGTGA 105 397 106 Antisense
AATCCGAGTGAATGAGCCCGACTTG 171 169 120 Antisense
TGAGCCCGACTTGGTGTTGTTTGTC 23 565 132 Antisense
TTGTCGGCGAGGCGCTTGTCGGAAA 560 705 152 Antisense
GGCGCTTGTCGGAAATGAGGCAGTC 529 541 162 Antisense
GAAGCTCTGGCAAATCACGCTTCAC 214 343 208 Antisense
GCAAAAGCCCCGTCTAATCGATGGA 351 317 237 Antisense
GACATATATCACTGGACAACCGATT 263 369 318 Antisense
GTGGTCAAACGTATTCGGATCTGAG 335 489 356 Antisense
Sequence Source Affymetrix Proprietary Database