[Home] | [Total List]

[190173_s_at] Ank repeat (6 domains)

Description ZC15.7 /REP_DB=WormBase Gene ID /WP=CE16688 /TR=O18270 /GB=CAB07714.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat (6 domains)
Cluster 6grp_total > 04      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 99.6
(3)
A 		71.6
(-3)
A 		83.5
(-0.4)
A 		95.4
(2.1)
A 		28
B 97.9
(3)
A 		72.1
(-0.1)
A 		73.8
(0.1)
A 		47.8
(-3)
A 		50
C 71.8
(-0.6)
A 		110.7
(3)
A 		78.3
(-0)
A 		46
(-3)
A 		65
avr 89.8
(3) 		84.8
(1.9) 		78.5
(0.5) 		63.1
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 126.2
(3)
A 		63.7
(-2.3)
A 		85
(-0.5)
A 		81.3
(-0.8)
A 		69
(-1.9)
A 		55.6
(-3)
A 		71
B 68.7
(-0.3)
A 		88.3
(1.8)
P 		72.4
(0.1)
A 		99.5
(3)
A 		73.4
(0.2)
A 		43.4
(-3)
A 		56
C 105
(3)
P 		63.6
(0)
A 		82.7
(1.4)
A 		70.1
(0.5)
A 		89.1
(1.9)
A 		21.7
(-3)
A 		83
avr 100
(3) 		71.9
(0.2) 		80
(1) 		83.6
(1.4) 		77.2
(0.7) 		40.2
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 36.3
(3)
A 		15.5
(-2.6)
A 		21.8
(-0.9)
A 		14
(-3)
A 		22
B 31.2
(3)
A 		17.8
(-0.8)
A 		17.1
(-1)
A 		10.2
(-3)
A 		21
C 23.8
(1)
A 		31.8
(3)
A 		27.3
(1.9)
A 		7.8
(-3)
A 		24
avr 30.4
(3) 		21.7
(0.4) 		22.1
(0.5) 		10.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 23.3
(3)
A 		22.6
(2.6)
A 		18.5
(0.1)
A 		20.6
(1.3)
A 		20.8
(1.5)
A 		13.5
(-3)
A 		10
B 23.9
(0.4)
A 		29.4
(2.8)
P 		17.6
(-2.4)
A 		26.4
(1.5)
A 		29.8
(3)
A 		16.2
(-3)
A 		14
C 38.9
(3)
P 		19.4
(-0.7)
A 		21
(-0.4)
A 		14.1
(-1.7)
A 		28.8
(1.1)
A 		7.3
(-3)
A 		32
avr 28.7
(3) 		23.8
(1.2) 		19
(-0.5) 		20.4
(-0) 		26.5
(2.2) 		12.3
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190173_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14550
Sequence Type Exemplar sequence
Representative Public ID ZC15.7 NCBI
Target Description ZC15.7 /REP_DB=WormBase Gene ID /WP=CE16688 /TR=O18270 /GB=CAB07714.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat (6 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075511 NCBI Caenorhabditis elegans ZC15.7 (ZC15.7) mRNA, complete cds. 11/11 None
SNAP00000015574 ENSEMBL cdna:SNAP chromosome:CEL140:V:20276780:20288136:-1 10/11 None
GENEFINDER00000015583 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20276750:20287583:-1 10/11 None
ZC15.7 ENSEMBL cdna:known chromosome:CEL140:V:20279476:20287452:-1 gene:ZC15.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20279526-20287424(-) 99.89 100.0
Public Domain and Genome References
Gene Title Ank repeat (6 domains)
Ensembl ZC15.7
Entrez Gene 180329 Entrez gene
SwissProt O18270 EMBL-EBI
WormBase CE16688 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.4542.1.S1_AT inversin cfa
CANINE_2:CFAAFFX.4698.1.S1_S_AT inversin cfa
CHICKEN:GGA.2450.1.S1_AT inversin gga
HG-U133_PLUS_2:211054_AT inversin hs
HG-U133A:211054_AT inversin hs
HG-U133A_2:211054_AT inversin hs
HG-U133A:210114_AT inversin hs
HG-U133_PLUS_2:210114_AT inversin hs
HG-FOCUS:210114_AT inversin hs
HG-U133A_2:210114_AT inversin hs
HU35KSUBA:AA452316_AT inversin hs
HU35KSUBB:RC_N32412_AT inversin hs
HU35KSUBD:RC_AA400817_S_AT inversin hs
HG-U133A:211055_S_AT inversin hs
HG-U133_PLUS_2:211055_S_AT inversin hs
HG-U133A_2:211055_S_AT inversin hs
U133_X3P:G4104744_3P_AT inversin hs
U133_X3P:G13623522_3P_S_AT inversin hs
HG-U95AV2:37132_AT inversin hs
HG-U95C:63937_R_AT inversin hs
HU35KSUBB:RC_T16529_AT Inversin hs
U133_X3P:HS.180236.0.A1_3P_AT Inversin hs
HG-U133_PLUS_2:235031_AT Inversin hs
HG-U133B:235031_AT Inversin hs
HG-U95C:63403_AT Inversin hs
HG-U95E:67397_AT Inversin hs
HG-U95D:68929_AT Inversin hs
HU35KSUBB:RC_H86351_AT Inversin hs
HU35KSUBC:RC_AA234826_AT Inversin hs
MG-U74AV2:103811_AT inversin mm
MG-U74CV2:129249_R_AT inversin mm
MOE430A:1419308_AT inversin mm
MOUSE430A_2:1419308_AT inversin mm
MOUSE430_2:1419308_AT inversin mm
MOE430B:1460491_AT inversin mm
MOUSE430_2:1460491_AT inversin mm
MOE430B:1444709_AT inversin mm
MOUSE430_2:1444709_AT inversin mm
MU19KSUBA:TC21083_AT Inversin (Invs), mRNA mm
RG-U34C:RC_AI144715_AT Similar to Inv protein - mouse rn
Protein Similarities
Method ID Description E-Value
blast CAB07714 Hypothetical protein ZC15.7 [Caenorhabditis elegans] ref|NP_507912.1| ZC15.7 [Caenorhabditis elegans] 0.0
blast CAE67437 Hypothetical protein CBG12929 [Caenorhabditis briggsae] 0.0
blast AAQ09555 inv-like protein [Hemicentrotus pulcherrimus] 7.0E-50
blast CAA09388 inversin [Mus musculus] 2.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 0.34
Pfam IPR002110 EMBL-EBI Ankyrin 0.12
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-9
Pfam IPR002110 EMBL-EBI Ankyrin 7.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 34.0
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 0.34
Pfam IPR002110 EMBL-EBI Ankyrin 0.12
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-9
Pfam IPR002110 EMBL-EBI Ankyrin 7.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 34.0
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 0.34
Pfam IPR002110 EMBL-EBI Ankyrin 0.12
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-9
Pfam IPR002110 EMBL-EBI Ankyrin 7.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 34.0
Pfam IPR002110 EMBL-EBI Ankyrin 0.61
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015583 5 13-35,263-285,661-683,718-735,805-827
Sequence
Target Sequence 
>C. ELEGANS:190173_S_AT
tccacctagccagtggtcgtggccacacagatgtgctccgctgcctggtggcctccggag
ccaacatgaatgacgtagacgaggtgggacgtacggcggtcttctgggcctgtatgggtg
gacaggcacatacattgcattgtatgattaaggaattaggatttgaatggagaacatcgg
gatctgtcaatacccgtccaaaatgtgacaaaaacgggaggactgctcttcatgcggccg
ccgtcgagagctccgcgtgtattaatgttttgttaagtatagaaaaagaagacaatttcc
tatcctcaccgctagttggctggctggacaaaaacggcgagacagcactgcacgaagctt
gccttgcgagcagaattgattgtattttgtcacttttaaatggtggaagtgctgtgaatg
catttggccgtccccaaaggaccccgctagattgtgccatgcaaccaaccgtcggagcac
cgaatttgagtgttatagagtacttacggtctaaaagtgcacttacatttgctgaattga
ggaacacggctacttcagttcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCTAGCCAGTGGTCGTGGCCA 91 589 1295 Antisense
GTCTTCTGGGCCTGTATGGGTGGAC 106 469 1393 Antisense
GGATCTGTCAATACCCGTCCAAAAT 153 513 1474 Antisense
AAAACGGGAGGACTGCTCTTCATGC 391 131 1505 Antisense
GAGAGCTCCGCGTGTATTAATGTTT 115 395 1540 Antisense
AAGAAGACAATTTCCTATCCTCACC 557 151 1580 Antisense
GAGACAGCACTGCACGAAGCTTGCC 302 393 1633 Antisense
GAAGCTTGCCTTGCGAGCAGAATTG 60 341 1648 Antisense
TGCTGTGAATGCATTTGGCCGTCCC 433 583 1704 Antisense
TAGATTGTGCCATGCAACCAACCGT 137 633 1742 Antisense
GGAACACGGCTACTTCAGTTCTTCA 394 529 1835 Antisense
Sequence Source Affymetrix Proprietary Database