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[190171_at] extracellular protein

Description C07A4.3 /REP_DB=WormBase Gene ID /WP=CE07991 /TR=Q93193 /GB=CAB01716.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=extracellular protein
Cluster 6grp_total > 99      4grp_total > 33      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 7.1
(-3)
A 		67.9
(1.8)
A 		38.5
(-0.5)
A 		82.8
(3)
A 		76
B 8.2
(-3)
A 		48.2
(3)
A 		32.7
(0.7)
A 		31.7
(0.5)
A 		40
C 6
(-3)
A 		43.1
(1.9)
A 		51.5
(3)
A 		33.6
(0.6)
A 		46
avr 7.1
(-3) 		53.1
(3) 		40.9
(1.4) 		49.4
(2.5) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 11.1
(-2.7)
A 		8.3
(-2.9)
A 		7.8
(-2.9)
A 		6.8
(-3)
A 		70.2
(1.2)
A 		96.8
(3)
P 		90
B 42.6
(-1)
A 		16.6
(-3)
A 		37.8
(-1.4)
A 		23.3
(-2.5)
A 		91.2
(2.7)
P 		95.1
(3)
P 		79
C 6.3
(-3)
A 		58.6
(1.1)
A 		64.1
(1.5)
A 		16.9
(-2.2)
A 		83
(3)
M 		68
(1.8)
P 		77
avr 20
(-2.6) 		27.8
(-2) 		36.6
(-1.2) 		15.7
(-3) 		81.5
(2.6) 		86.6
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.6
(-3)
A 		14.7
(3)
A 		10.1
(0.7)
A 		12.1
(1.7)
A 		12
B 2.6
(-3)
A 		11.9
(3)
A 		7.6
(0.2)
A 		6.7
(-0.4)
A 		9
C 2
(-3)
A 		12.4
(0.9)
A 		18
(3)
A 		5.7
(-1.6)
A 		16
avr 2.4
(-3) 		13
(3) 		11.9
(2.4) 		8.2
(0.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 2.1
(-2.9)
A 		2.9
(-2.7)
A 		1.7
(-3)
A 		1.7
(-3)
A 		21.2
(2.3)
A 		23.6
(3)
P 		22
B 14.8
(-1.2)
A 		5.5
(-3)
A 		9.2
(-2.3)
A 		6.2
(-2.9)
A 		37.1
(3)
P 		35.4
(2.7)
P 		32
C 2.3
(-3)
A 		17.9
(0.8)
A 		16.3
(0.4)
A 		3.4
(-2.7)
A 		26.8
(3)
M 		22.8
(2)
P 		25
avr 6.4
(-2.4) 		8.8
(-1.8) 		9.1
(-1.7) 		3.8
(-3) 		28.4
(3) 		27.3
(2.7) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17161
Sequence Type Exemplar sequence
Representative Public ID C07A4.3 NCBI
Target Description C07A4.3 /REP_DB=WormBase Gene ID /WP=CE07991 /TR=Q93193 /GB=CAB01716.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=extracellular protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077306 NCBI Caenorhabditis elegans C07A4.3 (C07A4.3) mRNA, complete cds. 11/11 None
SNAP00000044348 ENSEMBL cdna:SNAP chromosome:CEL140:X:10174789:10175711:1 11/11 None
GENEFINDER00000044349 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10174960:10175695:1 10/11 None
C07A4.3 ENSEMBL cdna:known chromosome:CEL140:X:10174454:10175711:1 gene:C07A4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10174453-10175711(+) 100.0 100.0
Public Domain and Genome References
Gene Title extracellular protein
Ensembl C07A4.3
Entrez Gene 182352 Entrez gene
SwissProt Q93193 EMBL-EBI
WormBase CE07991 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01716 Hypothetical protein C07A4.3 [Caenorhabditis elegans] ref|NP_509707.1| C07A4.3 [Caenorhabditis elegans] 0.0
blast CAB01716 Hypothetical protein C07A4.3 [Caenorhabditis elegans] ref|NP_509707.1| C07A4.3 [Caenorhabditis elegans] 1.0E-129
blast CAB01716 Hypothetical protein C07A4.3 [Caenorhabditis elegans] ref|NP_509707.1| C07A4.3 [Caenorhabditis elegans] 1.0E-119
blast CAE70535 Hypothetical protein CBG17170 [Caenorhabditis briggsae] 3.0E-68
blast CAE70535 Hypothetical protein CBG17170 [Caenorhabditis briggsae] 4.0E-68
blast CAE70535 Hypothetical protein CBG17170 [Caenorhabditis briggsae] 8.0E-68
blast CAB01715 Hypothetical protein C07A4.2 [Caenorhabditis elegans] ref|NP_509706.2| C07A4.2 [Caenorhabditis elegans] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 4.1E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 4.1E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 4.1E-28
Sequence
Target Sequence 
>C. ELEGANS:190171_AT
agatgtttgtttcaatctccggcgtagatccagaactaaccaagctaacaaatccaagcg
atgttatggtctatatgcaaaacaagtcattagaagacaaattggatccagcagaatata
gtatcaaagatcttaaaaaatggattgtacactttcataataagtatagagctcatcata
gctctccagcagttactgtagattcgaatcttaccaatcttgcccagaaatggtcggatg
aaatggcctttcacaagaaatgtttagttcacgagcaaccttcaaaatacggtgaaaatc
taacatcgtttgcgtcttcaaaattcccatctccaaaaacttgtgcagctgcactcatac
acggattttatacagaaggctatggatttaattacactcgctttaaccctggatcttggt
cgaaagtcgggcacttcactcaactgctctggaagaattcgcgcaaaattggagttggag
tttcagttgcaaagcggggaacaatgtatcatgtctacgtttgtatcaaatacgacccac
ctggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGTTTGTTTCAATCTCCGGCGT 27 69 479 Antisense
CTCCGGCGTAGATCCAGAACTAACC 541 233 495 Antisense
GAATCTTACCAATCTTGCCCAGAAA 610 327 684 Antisense
GTTTAGTTCACGAGCAACCTTCAAA 131 447 740 Antisense
AATCTAACATCGTTTGCGTCTTCAA 68 171 775 Antisense
AAATTCCCATCTCCAAAAACTTGTG 687 113 799 Antisense
CAGCTGCACTCATACACGGATTTTA 595 203 824 Antisense
ACTCGCTTTAACCCTGGATCTTGGT 180 95 874 Antisense
TGGTCGAAAGTCGGGCACTTCACTC 423 549 895 Antisense
GCACTTCACTCAACTGCTCTGGAAG 669 315 909 Antisense
TGTATCAAATACGACCCACCTGGTA 422 559 1000 Antisense
Sequence Source Affymetrix Proprietary Database