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[190166_at] ADP/ATP translocase

Description T01B11.4 /REP_DB=WormBase Gene ID /WP=CE12898 /TR=P91410 /GB=AAB38001.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP translocase
Cluster 4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_total > 98      4grp_total > 27      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 61.5
(-2.2)
P 		48.2
(-3)
P 		55.6
(-2.6)
P 		150.3
(3)
P 		102
B 62.5
(-1.8)
P 		118.7
(3)
P 		65.3
(-1.6)
P 		48.6
(-3)
P 		70
C 67.7
(0)
P 		74.9
(0.9)
P 		42.8
(-3)
P 		92.3
(3)
P 		50
avr 63.9
(-1.7) 		80.6
(0.7) 		54.6
(-3) 		97.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 55.5
(-2.7)
A 		37.2
(-3)
A 		48.2
(-2.8)
A 		112.6
(-1.9)
P 		324.1
(1)
P 		466
(3)
P 		429
B 61.3
(-2.9)
P 		52.1
(-3)
P 		51.5
(-3)
M 		116.5
(-2.1)
P 		376.9
(1.5)
P 		487.5
(3)
P 		436
C 70.6
(-2.5)
P 		63.1
(-2.6)
P 		38.5
(-3)
A 		123.1
(-1.8)
P 		300.5
(0.8)
P 		457.1
(3)
P 		419
avr 62.5
(-2.8) 		50.8
(-2.9) 		46.1
(-3) 		117.4
(-2) 		333.8
(1.1) 		470.2
(3) 		424
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.4
(3)
P 		10.5
(-3)
P 		14.5
(-1)
P 		22
(2.8)
P 		12
B 19.9
(0)
P 		29.3
(3)
P 		15.1
(-1.5)
P 		10.3
(-3)
P 		19
C 22.4
(3)
P 		21.5
(2.3)
P 		14.9
(-3)
P 		15.6
(-2.4)
P 		8
avr 21.6
(3) 		20.4
(1.9) 		14.8
(-3) 		16
(-1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 10.2
(-3)
A 		13.2
(-2.8)
A 		10.5
(-3)
A 		28.5
(-1.9)
P 		97.8
(2.1)
P 		113.4
(3)
P 		103
B 21.3
(-2.7)
P 		17.3
(-2.8)
P 		12.5
(-3)
M 		30.8
(-2.4)
P 		153.1
(2)
P 		181.8
(3)
P 		169
C 26.2
(-2.3)
P 		19.3
(-2.6)
P 		9.8
(-3)
A 		24.8
(-2.4)
P 		97.2
(0.7)
P 		153
(3)
P 		143
avr 19.2
(-2.6) 		16.6
(-2.8) 		10.9
(-3) 		28
(-2.3) 		116
(1.6) 		149.4
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9106
Sequence Type Exemplar sequence
Representative Public ID T01B11.4 NCBI
Target Description T01B11.4 /REP_DB=WormBase Gene ID /WP=CE12898 /TR=P91410 /GB=AAB38001.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ADP-ATP translocase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069039 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-316) (tag-316) mRNA, complete cds. 11/11 None
SNAP00000008418 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8459209:8460361:-1 11/11 None
GENEFINDER00000008424 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8459209:8463796:-1 11/11 None
T01B11.4 ENSEMBL cdna:known chromosome:CEL140:IV:8459204:8460259:-1 gene:T01B11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8459214-8460265(-) 100.0 100.0
chrIV:9708199-9709173(-) 92.57 92.57
Public Domain and Genome References
Gene Title ADP/ATP translocase
Gene Symbol tag-316
Ensembl T01B11.4
Entrez Gene 177648 Entrez gene
SwissProt P91410 EMBL-EBI
WormBase CE12898 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248023_AT mitochondrial substrate carrier family protein at
CANINE_2:CFAAFFX.6830.1.S1_AT similar to solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 cfa
HG-U133_PLUS_2:221037_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 hs
HG-U133A:221037_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 hs
HG-U133A_2:221037_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 hs
U133_X3P:G13775207_3P_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 hs
HG-U95C:61533_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 hs
HG-U95D:90666_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 hs
MOE430B:1453133_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 mm
MOUSE430_2:1453133_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T25851 hypothetical protein T01B11.5 - Caenorhabditis elegans 0.0
blast CAE71543 Hypothetical protein CBG18486 [Caenorhabditis briggsae] 0.0
blast CAE71545 Hypothetical protein CBG18488 [Caenorhabditis briggsae] 0.0
blast AAB38001 Hypothetical protein T01B11.4 [Caenorhabditis elegans] ref|NP_501440.1| Temporarily Assigned Gene name family member (tag-316) [Caenorhabditis elegans] 1.0E-155
blast CAA92472 Hypothetical protein K01H12.2 [Caenorhabditis elegans] ref|NP_501727.1| K01H12.2 [Caenorhabditis elegans] 1.0E-155
blast AAB38001 Hypothetical protein T01B11.4 [Caenorhabditis elegans] ref|NP_501440.1| Temporarily Assigned Gene name family member (tag-316) [Caenorhabditis elegans] 1.0E-154
blast CAA92472 Hypothetical protein K01H12.2 [Caenorhabditis elegans] ref|NP_501727.1| K01H12.2 [Caenorhabditis elegans] 1.0E-154
blast CAE60169 Hypothetical protein CBG03723 [Caenorhabditis briggsae] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.6E-37
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.5E-19
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.6E-37
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.5E-19
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.6E-37
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.5E-19
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-4
Pfam IPR005828 EMBL-EBI General substrate transporter 6.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501440.1 3 129-151,189-211,226-248
T01B11.4 3 129-151,189-211,226-248
SNAP00000008418 3 163-185,223-245,260-282
GENEFINDER00000008424 11 54-76,193-215,225-247,254-271,342-364,371-393,408-427,434-451,785-807,845-867,882-904
Sequence
Target Sequence 
>C. ELEGANS:190166_AT
aacttcgctttcaaggatacttacaaaaacattttccaaaagggattggataagaagaag
gatttctggaagttcttcgccggaaatctagcttctggtggagcagctggagccacttcg
ctctgttttgtctacccattggattttgctcgtacccgtttggctgctgatgtcggaaaa
gctaatgaacgtgaattcaaaggcctggccgattgtctcgtcaagatcgcaaagtcggat
ggaccaatcggactctacagaggtttctttgtctcggtacaaggtatcatcatctaccgc
gccgcttacttcggaatgttcgacactgccaagatggtgttcactgctgatggcaagaaa
ctcaacttcttcgctgcctgggctattgctcaagtggttactgttggatctggaatcctc
tcctatccatgggatactgttcgtcgtcgcatgatgatgcagtctggtcgcaaagatgtt
ctctacaagaatactttggattgtgccgtcaagatcatcaaaaacgaaggaatgtccgcc
atgttcaagggagccctgtcaaatgtattccgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCGCTTTCAAGGATACTTACA 94 139 325 Antisense
GAAGTTCTTCGCCGGAAATCTAGCT 460 337 393 Antisense
TCGCCGGAAATCTAGCTTCTGGTGG 351 599 401 Antisense
ACGTGAATTCAAAGGCCTGGCCGAT 335 93 513 Antisense
TCAAAGGCCTGGCCGATTGTCTCGT 368 629 521 Antisense
GTCTCGTCAAGATCGCAAAGTCGGA 430 469 539 Antisense
ACAGAGGTTTCTTTGTCTCGGTACA 651 105 581 Antisense
GGCTATTGCTCAAGTGGTTACTGTT 335 537 705 Antisense
TGTTGGATCTGGAATCCTCTCCTAT 508 563 726 Antisense
TACTTTGGATTGTGCCGTCAAGATC 86 645 816 Antisense
AGCCCTGTCAAATGTATTCCGTGGA 561 81 876 Antisense
Sequence Source Affymetrix Proprietary Database