[Home] | [Total List]

[190165_s_at] myosin IA

Description T02C12.1 /REP_DB=WormBase Gene ID /WP=CE01061 /GEN=hum-5 /TR=Q27328 /GB=CAA84673.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=myosin IA
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 20      6grp_total > 15      4grp_total > 63      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 1389.5
(3)
P 		1089.4
(-3)
P 		1213.3
(-0.5)
P 		1099
(-2.8)
P 		300
B 1141.7
(-3)
P 		1214.7
(-0.8)
P 		1344.7
(3)
P 		1276.5
(1)
P 		203
C 1358
(1.8)
P 		1152.8
(-1.7)
P 		1426.1
(3)
P 		1077.1
(-3)
P 		349
avr 1296.4
(1.9) 		1152.3
(-3) 		1328
(3) 		1150.9
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 1309.3
(2.1)
P 		1380.7
(3)
P 		928.4
(-2.6)
P 		892.7
(-3)
P 		932.3
(-2.5)
P 		931
(-2.5)
P 		488
B 1359
(2.8)
P 		1374.9
(3)
P 		1128.5
(0.3)
P 		1047
(-0.6)
P 		841.3
(-2.8)
P 		824.7
(-3)
P 		550
C 1437.7
(3)
P 		1323.4
(2)
P 		1075.4
(-0.3)
P 		902.8
(-1.9)
P 		964.3
(-1.3)
P 		778.7
(-3)
P 		659
avr 1368.7
(3) 		1359.7
(2.9) 		1044.1
(-0.7) 		947.5
(-1.8) 		912.6
(-2.2) 		844.8
(-3) 		524
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 505.9
(3)
P 		236.5
(-1.7)
P 		317.2
(-0.3)
P 		160.9
(-3)
P 		345
B 364.1
(3)
P 		300
(-1.2)
P 		311.6
(-0.4)
P 		272
(-3)
P 		92
C 449.5
(2.1)
P 		331.5
(-0.1)
P 		497
(3)
P 		181.6
(-3)
P 		315
avr 439.8
(3) 		289.3
(-0.8) 		375.3
(1.4) 		204.8
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 241.4
(-2.2)
P 		491
(3)
P 		202.2
(-3)
P 		226.4
(-2.5)
P 		281.3
(-1.4)
P 		226.7
(-2.5)
P 		289
B 472.9
(3)
P 		457.6
(2.5)
P 		274
(-3)
P 		277.3
(-2.9)
P 		341.8
(-1)
P 		307.5
(-2)
P 		199
C 532.9
(3)
P 		403.8
(0.8)
P 		273.7
(-1.4)
P 		181.6
(-3)
P 		312
(-0.8)
P 		260.7
(-1.6)
P 		351
avr 415.7
(2.1) 		450.8
(3) 		250
(-2.4) 		228.4
(-3) 		311.7
(-0.8) 		265
(-2) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7485
Sequence Type Exemplar sequence
Representative Public ID T02C12.1 NCBI
Target Description T02C12.1 /REP_DB=WormBase Gene ID /WP=CE01061 /GEN=hum-5 /TR=Q27328 /GB=CAA84673.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=myosin IA
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065408 NCBI Caenorhabditis elegans Heavy chain, Unconventional Myosin family member (hum-5) (hum-5) mRNA, complete cds. 11/11 A 
SNAP00000027339 ENSEMBL cdna:SNAP chromosome:CEL140:III:4029338:4036804:-1 11/11 None
GENEFINDER00000027342 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4029338:4036804:-1 11/11 None
T02C12.1.1 ENSEMBL cdna:known chromosome:CEL140:III:4029086:4036816:-1 gene:T02C12.1 11/11 None
T02C12.1.2 ENSEMBL cdna:known chromosome:CEL140:III:4029110:4036811:-1 gene:T02C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4029337-4036804(-) 100.0 100.0
Public Domain and Genome References
Gene Title myosin IA
Gene Symbol hum-5
Ensembl T02C12.1
Entrez Gene 175521 Entrez gene
SwissProt Q27328 EMBL-EBI
WormBase CE01061 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28119.1.S1_AT similar to Myosin Id cfa
DROSOPHILA_2:1641074_S_AT Myosin 31DF dm
DROSGENOME1:142975_AT Myosin 31DF dm
CHICKEN:GGA.7191.1.S1_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.26666.1.S1_S_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.26666.2.S1_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.426.1.S1_S_AT similar to Myosin Id gga
CHICKEN:GGAAFFX.426.2.S1_S_AT similar to Myosin Id gga
HU35KSUBC:RC_N26257_AT myosin ID hs
U133_X3P:HS2.39871.1.S1_3P_AT myosin ID hs
U133_X3P:HS.39871.0.S1_3P_AT myosin ID hs
HG-U133_PLUS_2:1555397_AT myosin ID hs
HG-U133A_2:212338_AT myosin ID hs
HG-U133_PLUS_2:212338_AT myosin ID hs
HG-U133A:212338_AT myosin ID hs
HG-U95AV2:35729_AT myosin ID hs
HG-U133_PLUS_2:241210_AT Myosin ID hs
HG-U133B:241210_AT Myosin ID hs
HG-U133_PLUS_2:241645_AT Myosin ID hs
HG-U133B:241645_AT Myosin ID hs
HG-U133_PLUS_2:241651_AT Myosin ID hs
HG-U133B:241651_AT Myosin ID hs
HG-U133_PLUS_2:243732_AT Myosin ID hs
HG-U133B:243732_AT Myosin ID hs
HG-U95C:49859_AT Myosin ID hs
HG-U95C:54252_R_AT Myosin ID hs
HG-U95E:67073_AT Myosin ID hs
HG-U95E:84144_AT Myosin ID hs
HG-U95E:85434_AT Myosin ID hs
HU35KSUBB:RC_T95079_AT Myosin ID hs
U133_X3P:HS.179872.0.A1_3P_AT Myosin ID hs
U133_X3P:HS.270036.0.A1_3P_AT Myosin ID hs
U133_X3P:HS.293467.0.A1_3P_AT Myosin ID hs
U133_X3P:HS.293467.0.S1_3P_AT Myosin ID hs
MU11KSUBA:AA543807_S_AT myosin ID mm
MG-U74AV2:93427_AT myosin ID mm
MOE430A:1435463_S_AT myosin ID mm
MOUSE430A_2:1435463_S_AT myosin ID mm
MOUSE430_2:1435463_S_AT myosin ID mm
MOE430B:1458550_AT myosin ID mm
MOUSE430_2:1458550_AT myosin ID mm
MOE430B:1435046_AT Myosin ID (Myo1d), mRNA mm
MOUSE430_2:1435046_AT Myosin ID (Myo1d), mRNA mm
MOUSE430_2:1444515_AT Myosin ID (Myo1d), mRNA mm
MOE430B:1444515_AT Myosin ID (Myo1d), mRNA mm
MOE430B:1459102_AT Myosin ID (Myo1d), mRNA mm
MOUSE430_2:1459102_AT Myosin ID (Myo1d), mRNA mm
RG-U34A:X71997_AT myosin IC rn
RG-U34B:RC_AA900847_AT myosin IC rn
RAE230A:1388917_AT myosin IC rn
RAT230_2:1388917_AT myosin IC rn
RAE230A:1369779_AT myosin IC rn
RAT230_2:1369779_AT myosin IC rn
RAE230B:1390970_AT Myosin IC rn
RAT230_2:1390970_AT Myosin IC rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16459 myosin inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84673 Hypothetical protein T02C12.1 [Caenorhabditis elegans] emb|CAA53244.1| myosin IA [Caenorhabditis elegans] ref|NP_497809.1| Heavy chain, Unconventional Myosin family member (hum-5) [Caenorhabditis elegans] 0.0
blast CAE72880 Hypothetical protein CBG20192 [Caenorhabditis briggsae] 0.0
blast XP_688008 PREDICTED: similar to Myosin Id [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.0E-126
Pfam IPR010926 EMBL-EBI Myosin tail 2 7.7E-74
Sequence
Target Sequence 
>C. ELEGANS:190165_S_AT
gagaggagactatctttcgcagcaagaagaacttgagctcccaacaactgtatcaacgta
tcacgatggaatccaagccctccgacaaagccatccatttggaaaagtgttattttctac
atatgttcaaaagttcaacaagttcaacaaaagctcactgagagttcttattgtgactga
tcgatttgtggcaaaattggaaaacaaaaagttcaaattgctcaaagagccaattccatt
gcagtcgatatctcgaatttcggtttgcgcagaatcgaatggccttttcgtgattcatgt
tggcgataacgacattgtcggatgtgcaaagaacacgaaaaatgaggagagagtcggaga
aatgattggcactttgttggctcattatgacaaaattacaatgcgacgttccccagtcct
gattcaatccgccgtcgtgtgcacattgggcggaaaaacccgtacaattcgtgtgtttga
tgccgagaacaacaacgtgcctccagttttcaagaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGGAGACTATCTTTCGCAGCAA 594 395 2496 Antisense
GAGCTCCCAACAACTGTATCAACGT 647 387 2530 Antisense
TATCACGATGGAATCCAAGCCCTCC 61 659 2554 Antisense
CCTCCGACAAAGCCATCCATTTGGA 8 267 2574 Antisense
AATTCCATTGCAGTCGATATCTCGA 162 179 2727 Antisense
GTTTGCGCAGAATCGAATGGCCTTT 604 445 2758 Antisense
ATGGCCTTTTCGTGATTCATGTTGG 235 51 2774 Antisense
GATTGGCACTTTGTTGGCTCATTAT 240 435 2859 Antisense
TCCGCCGTCGTGTGCACATTGGGCG 111 595 2923 Antisense
TGCCGAGAACAACAACGTGCCTCCA 98 585 2976 Antisense
ACGTGCCTCCAGTTTTCAAGAAGAA 446 95 2990 Antisense
Sequence Source Affymetrix Proprietary Database