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[190163_at] DNA-binding protein

Description F19F10.1 /REP_DB=WormBase Gene ID /WP=CE09481 /TR=O01521 /GB=AAB52279.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster 6grp_total > 79      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 41.7
(-0.6)
A 		38.2
(-0.8)
A 		7.8
(-3)
A 		90.9
(3)
P 		83
B 41.2
(-2.1)
P 		36
(-3)
A 		43
(-1.8)
A 		71.7
(3)
P 		36
C 49
(-1.1)
A 		51.1
(-0.7)
A 		36.3
(-3)
A 		75.4
(3)
P 		39
avr 44
(-1.2) 		41.8
(-1.5) 		29
(-3) 		79.3
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 35.7
(-0)
A 		35.3
(-0.1)
A 		8.3
(-3)
A 		27.4
(-0.9)
A 		49.6
(1.5)
P 		63.3
(3)
A 		55
B 40.2
(0.2)
M 		69.9
(3)
P 		31.6
(-0.6)
A 		5.4
(-3)
A 		23.6
(-1.3)
A 		66.1
(2.6)
P 		65
C 25
(-0.3)
A 		30.8
(1)
A 		15.8
(-2.2)
A 		12.2
(-3)
A 		20
(-1.3)
A 		40.4
(3)
A 		28
avr 33.6
(-0.3) 		45.3
(1.4) 		18.6
(-2.5) 		15
(-3) 		31.1
(-0.7) 		56.6
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.2
(3)
A 		8.3
(-0.1)
A 		2
(-3)
A 		13.3
(2.1)
P 		13
B 13.1
(0.9)
P 		8.9
(-3)
A 		10
(-2)
A 		15.3
(3)
P 		6
C 16.2
(3)
A 		14.7
(0.4)
A 		12.7
(-3)
A 		12.7
(-3)
P 		4
avr 14.8
(3) 		10.6
(-0.8) 		8.2
(-3) 		13.8
(2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.6
(-0.9)
A 		12.5
(1.7)
A 		1.8
(-3)
A 		7
(-0.7)
A 		15
(2.8)
P 		15.4
(3)
A 		14
B 14
(0.3)
M 		23.3
(2.7)
P 		7.7
(-1.4)
A 		1.4
(-3)
A 		9.6
(-0.9)
A 		24.6
(3)
P 		23
C 9.3
(0.7)
A 		9.4
(0.8)
A 		4
(-2.2)
A 		2.5
(-3)
A 		6.5
(-0.8)
A 		13.5
(3)
A 		11
avr 10
(-0.3) 		15.1
(1.9) 		4.5
(-2.6) 		3.6
(-3) 		10.4
(-0.1) 		17.8
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11925
Sequence Type Exemplar sequence
Representative Public ID F19F10.1 NCBI
Target Description F19F10.1 /REP_DB=WormBase Gene ID /WP=CE09481 /TR=O01521 /GB=AAB52279.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072548 NCBI Caenorhabditis elegans F19F10.1 (F19F10.1) mRNA, complete cds. 11/11 None
SNAP00000016030 ENSEMBL cdna:SNAP chromosome:CEL140:V:7565848:7566837:1 11/11 None
GENEFINDER00000016042 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7565848:7566837:1 11/11 None
F19F10.1 ENSEMBL cdna:known chromosome:CEL140:V:7565306:7566837:1 gene:F19F10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7565306-7566838(+) 100.0 100.0
Public Domain and Genome References
Gene Title DNA-binding protein
Ensembl F19F10.1
Entrez Gene 184684 Entrez gene
SwissProt O01521 EMBL-EBI
WormBase CE09481 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52279 Hypothetical protein F19F10.1 [Caenorhabditis elegans] ref|NP_504949.1| F19F10.1 [Caenorhabditis elegans] 1.0E-107
blast AAB52279 Hypothetical protein F19F10.1 [Caenorhabditis elegans] ref|NP_504949.1| F19F10.1 [Caenorhabditis elegans] 8.0E-88
blast CAE57811 Hypothetical protein CBG00835 [Caenorhabditis briggsae] 4.0E-33
blast CAE57811 Hypothetical protein CBG00835 [Caenorhabditis briggsae] 5.0E-33
blast AAB52283 Hypothetical protein F19F10.5 [Caenorhabditis elegans] ref|NP_504947.1| F19F10.5 [Caenorhabditis elegans] 6.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 5.2E-27
Pfam IPR000418 EMBL-EBI Ets-domain 5.2E-27
Sequence
Target Sequence 
>C. ELEGANS:190163_AT
tggaaaactccgtcttctgagcttccttcgtgaccttcttgaagacgaatcgaattcaga
tatcatctattggtttgacaaatctgaatcggtattcaagatgagcaagccacacaaggt
tgccgagctgtggggagctgctacgggtaatccaggaatgaactatgacaaaatgtcaag
aggacttcgttatttctacacaaacaatacattggaaaaggttccaggcaaagatgctcg
ttatcgctttatcgattctccaagacattcgttcctagatttttccatgaaaactgaact
tgagacgccagtcaaaagaactcctttgttcaatatttcaaatctaatttcagatttcga
agtttccaataatagcttgacatcgtcaccaacatcgagtgcatcttcagtagaaccatc
ttcgccaacaacaaccgaatcatcactggatccatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAAACTCCGTCTTCTGAGCTTC 661 547 135 Antisense
CTTCCTTCGTGACCTTCTTGAAGAC 639 217 156 Antisense
CAAGCCACACAAGGTTGCCGAGCTG 537 185 240 Antisense
GTGGGGAGCTGCTACGGGTAATCCA 602 487 264 Antisense
CAGGCAAAGATGCTCGTTATCGCTT 284 209 359 Antisense
GTTATCGCTTTATCGATTCTCCAAG 278 447 374 Antisense
ATTCTCCAAGACATTCGTTCCTAGA 503 9 389 Antisense
ATAGCTTGACATCGTCACCAACATC 313 23 506 Antisense
ACCAACATCGAGTGCATCTTCAGTA 656 83 522 Antisense
TTCAGTAGAACCATCTTCGCCAACA 145 687 540 Antisense
ACCGAATCATCACTGGATCCATCAC 45 89 568 Antisense
Sequence Source Affymetrix Proprietary Database