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[190160_at] Ribosomal Proteins L2

Description B0250.7 /REP_DB=WormBase Gene ID /WP=CE18483 /TR=Q9XVF4 /GB=CAB03795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ribosomal Proteins L2
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 20      6grp_total > 99      4grp_total > 19      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 75.8
(-1.1)
P 		61.9
(-3)
A 		62.6
(-2.9)
P 		106.3
(3)
P 		44
B 48.9
(-3)
P 		92.7
(3)
P 		60.2
(-1.5)
P 		89.3
(2.5)
P 		44
C 57.4
(-0.7)
A 		58.6
(-0.6)
P 		33
(-3)
P 		97.5
(3)
A 		65
avr 60.7
(-1.8) 		71.1
(-0.5) 		51.9
(-3) 		97.7
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 55.6
(-1.1)
P 		40.2
(-2.8)
P 		79.6
(1.4)
P 		38.3
(-3)
P 		65.5
(-0.1)
P 		94
(3)
P 		56
B 59.8
(1.1)
P 		39.1
(-1.7)
P 		29.5
(-3)
A 		65.3
(1.8)
P 		71.5
(2.6)
P 		74.3
(3)
P 		45
C 76.4
(-1)
P 		57.5
(-2.9)
P 		56
(-3)
A 		68.2
(-1.8)
P 		117.8
(3)
P 		61.7
(-2.4)
P 		62
avr 63.9
(-0.2) 		45.6
(-3) 		55
(-1.6) 		57.3
(-1.2) 		84.9
(3) 		76.7
(1.7) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 27.6
(3)
P 		13.4
(-3)
A 		16.4
(-1.7)
P 		15.6
(-2.1)
P 		14
B 15.6
(-1.9)
P 		22.9
(3)
P 		14
(-3)
P 		19
(0.4)
P 		9
C 19
(3)
A 		16.9
(1.3)
P 		11.5
(-3)
P 		16.4
(0.9)
A 		8
avr 20.7
(3) 		17.7
(0.3) 		14
(-3) 		17
(-0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.3
(-2.7)
P 		14.3
(-0.9)
P 		17.3
(0.5)
P 		9.7
(-3)
P 		19.8
(1.6)
P 		22.9
(3)
P 		13
B 20.8
(0.7)
P 		13
(-1.4)
P 		7.2
(-3)
A 		17.3
(-0.2)
P 		29
(3)
P 		27.7
(2.6)
P 		22
C 28.3
(0.6)
P 		17.5
(-2.1)
P 		14.2
(-2.9)
A 		13.7
(-3)
P 		38.1
(3)
P 		20.7
(-1.3)
P 		24
avr 19.8
(-0.4) 		14.9
(-2.3) 		12.9
(-3) 		13.6
(-2.7) 		29
(3) 		23.8
(1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13523
Sequence Type Exemplar sequence
Representative Public ID B0250.7 NCBI
Target Description B0250.7 /REP_DB=WormBase Gene ID /WP=CE18483 /TR=Q9XVF4 /GB=CAB03795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ribosomal Proteins L2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075537 NCBI Caenorhabditis elegans B0250.7 (B0250.7) mRNA, complete cds. 11/11 None
GENEFINDER00000043598 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20471497:20474007:-1 10/11 None
B0250.7 ENSEMBL cdna:known chromosome:CEL140:V:20471143:20474007:-1 gene:B0250.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043587 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20471142-20474007(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal Proteins L2
Ensembl B0250.7
Entrez Gene 181884 Entrez gene
SwissProt Q9XVF4 EMBL-EBI
WormBase CE18483 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03795 Hypothetical protein B0250.7 [Caenorhabditis elegans] ref|NP_507938.1| B0250.7 [Caenorhabditis elegans] 1.0E-115
blast CAB03795 Hypothetical protein B0250.7 [Caenorhabditis elegans] ref|NP_507938.1| B0250.7 [Caenorhabditis elegans] 4.0E-99
blast CAI46578 Hypothetical protein T10G3.5b [Caenorhabditis elegans] ref|NP_001024128.1| EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) [Caenorhabditis elegans] 3.0E-38
blast CAI46578 Hypothetical protein T10G3.5b [Caenorhabditis elegans] ref|NP_001024128.1| EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) [Caenorhabditis elegans] 5.0E-38
blast CAB03330 Hypothetical protein T10G3.5a [Caenorhabditis elegans] ref|NP_001024127.1| EEA1 (Early Endosome Antigen, Rab effector) homolog family member (eea-1) [Caenorhabditis elegans] gb|AAK52089.1| EEA1 [Caenorhabditis elegans] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002171 EMBL-EBI Ribosomal protein L2 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:190160_AT
gcctctccggtgttgcaggtgaaattgtttcgcctgggcaccggaaaaaaaacttggtac
caggcggttcaaagactgaacagtggcagacaaacgggtacctgctgcttcaatgtaaaa
tatctgggatcagtggaactgaaatcgaagggttcttgtgcccaatgtgtatggcagagc
ttggtggacctgatgaacttactgttcattttgaaaaagaccattctgacacatcaacca
acagaaatcatcccgagtacactccccctcagcagtctccacttgcattttctacaaaag
atcaagaaattgaagaacttcggataagagttgacgaagagaaacgttttgctgaacgga
taaaagaagaaatcggcaactacgccaacgtcatcgcccacaacgcagacaccaagaaga
cacgtatccgcctcccatccggagccaagaaggtcgttcaatcggtcaaccgcgccatga
ttggaccccgaatgcataaccaaaaagtggtaatccacgattcaagaaagatcgatgtcg
tctacacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCTCCGGTGTTGCAGGTGAAAT 274 281 32 Antisense
GGTGAAATTGTTTCGCCTGGGCACC 180 501 49 Antisense
GGTACCAGGCGGTTCAAAGACTGAA 116 501 87 Antisense
AACAGTGGCAGACAAACGGGTACCT 11 1 110 Antisense
GGGTACCTGCTGCTTCAATGTAAAA 428 497 127 Antisense
GTGTATGGCAGAGCTTGGTGGACCT 650 483 198 Antisense
GCTTGGTGGACCTGATGAACTTACT 671 291 210 Antisense
AGACCATTCTGACACATCAACCAAC 60 71 249 Antisense
GAAATCGGCAACTACGCCAACGTCA 500 359 400 Antisense
CCATGATTGGACCCCGAATGCATAA 272 269 506 Antisense
GAAAGATCGATGTCGTCTACACGAA 661 359 557 Antisense
Sequence Source Affymetrix Proprietary Database