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[190158_at] Lectin C-type domain

Description F36G9.11 /REP_DB=WormBase Gene ID /WP=CE15988 /TR=O45469 /GB=CAB04330.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 92      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 17.8
(-3)
A 		21.2
(-2.7)
A 		77.5
(3)
A 		25.7
(-2.2)
A 		60
B 29.1
(-3)
A 		69.6
(3)
A 		36.1
(-2)
A 		55.1
(0.9)
A 		41
C 21.7
(2.2)
A 		23.8
(3)
A 		8.2
(-3)
A 		15.9
(-0)
A 		16
avr 22.9
(-3) 		38.2
(2.2) 		40.6
(3) 		32.2
(0.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 20.7
(-1.9)
A 		7.2
(-3)
A 		8.3
(-2.9)
A 		44
(-0.1)
A 		83.3
(3)
A 		33.6
(-0.9)
A 		76
B 51.8
(1)
A 		48.6
(0.7)
A 		75.2
(3)
A 		29.6
(-1)
A 		43.5
(0.3)
A 		6
(-3)
A 		69
C 48.4
(0.9)
A 		71.6
(3)
A 		12.6
(-2.3)
A 		14.8
(-2.1)
A 		58.3
(1.8)
A 		5.1
(-3)
A 		67
avr 40.3
(0.3) 		42.5
(0.5) 		32
(-0.8) 		29.5
(-1.1) 		61.7
(3) 		14.9
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.5
(-2)
A 		4.6
(-2.7)
A 		20.3
(3)
A 		3.8
(-3)
A 		17
B 9.3
(-2.4)
A 		17.2
(3)
A 		8.4
(-3)
A 		11.7
(-0.8)
A 		9
C 7.2
(3)
A 		6.8
(2.5)
A 		2.9
(-2.7)
A 		2.7
(-3)
A 		5
avr 7.7
(-0.8) 		9.5
(1.6) 		10.5
(3) 		6.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.8
(-2.5)
A 		2.6
(-2.8)
A 		1.8
(-3)
A 		11.2
(-0.6)
A 		25.1
(3)
A 		8.2
(-1.4)
A 		23
B 18
(2.9)
A 		16.2
(2.2)
A 		18.3
(3)
A 		7.8
(-0.9)
A 		17.7
(2.8)
A 		2.2
(-3)
A 		16
C 18
(1.9)
A 		21.8
(3)
A 		3.2
(-2.6)
A 		3
(-2.6)
A 		18.9
(2.1)
A 		1.7
(-3)
A 		20
avr 13.3
(0.4) 		13.5
(0.4) 		7.8
(-1.6) 		7.3
(-1.8) 		20.6
(3) 		4
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14450
Sequence Type Exemplar sequence
Representative Public ID F36G9.11 NCBI
Target Description F36G9.11 /REP_DB=WormBase Gene ID /WP=CE15988 /TR=O45469 /GB=CAB04330.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074605 NCBI Caenorhabditis elegans F36G9.11 (F36G9.11) mRNA, complete cds. 11/11 None
SNAP00000043427 ENSEMBL cdna:SNAP chromosome:CEL140:V:15978735:15980152:1 11/11 None
GENEFINDER00000043434 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15978735:15984218:1 11/11 None
F36G9.11 ENSEMBL cdna:known chromosome:CEL140:V:15978735:15980152:1 gene:F36G9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15978734-15980152(+) 93.13 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F36G9.11
Entrez Gene 185374 Entrez gene
SwissProt O45469 EMBL-EBI
WormBase CE15988 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04331 Hypothetical protein F36G9.12 [Caenorhabditis elegans] ref|NP_507007.1| F36G9.12 [Caenorhabditis elegans] 0.0
blast CAE69641 Hypothetical protein CBG15882 [Caenorhabditis briggsae] 0.0
blast CAB05690 Hypothetical protein C31A11.7 [Caenorhabditis elegans] ref|NP_507120.2| C31A11.7 [Caenorhabditis elegans] 0.0
blast CAB04330 Hypothetical protein F36G9.11 [Caenorhabditis elegans] ref|NP_507006.1| F36G9.11 [Caenorhabditis elegans] 1.0E-124
blast CAE61136 Hypothetical protein CBG04897 [Caenorhabditis briggsae] 3.0E-54
blast CAE61134 Hypothetical protein CBG04895 [Caenorhabditis briggsae] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 4.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043434 9 336-358,415-437,452-474,495-514,560-582,587-609,661-683,704-726,736-758
Sequence
Target Sequence 
>C. ELEGANS:190158_AT
cggtgcatactacattatcggctcctctaccaactccgaagccacttccgccagcttgtg
aaaaggaatggctgtcgtttaagagaaagagtgagctttggtgtgtattggtcggaaatc
aaggagctgacaaccatgccttctcacaagccgaagccgaaaaaatctgcaaaaaacacg
gagcaacacttacaggagtgataagctcagaggagagagataagattgccgatgaggctc
ttcatcagctcggcgagatgaaaatggaagttggagcagtttggttgggagcaacaacta
ccccagattgtactgtgaagagttgtggggaagaggacactttcaaatggacagatggac
acactaccggagtcgctgggttcaaatggggagaacatgagccagataatcaagattatg
gaagtgacaaagcatgcattcaacagatcgtgatgagcccaacgtatgctaaagactcta
caaatcacaagttcgccgagtttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTGCATACTACATTATCGGCTCC 681 243 293 Antisense
CCACTTCCGCCAGCTTGTGAAAAGG 512 275 334 Antisense
GAGCTTTGGTGTGTATTGGTCGGAA 101 385 385 Antisense
CAAGGAGCTGACAACCATGCCTTCT 504 183 412 Antisense
ATTGCCGATGAGGCTCTTCATCAGC 511 5 517 Antisense
GAGCAACAACTACCCCAGATTGTAC 386 389 581 Antisense
GGACAGATGGACACACTACCGGAGT 604 525 641 Antisense
ACTACCGGAGTCGCTGGGTTCAAAT 340 1 655 Antisense
AACAGATCGTGATGAGCCCAACGTA 682 131 734 Antisense
GCCCAACGTATGCTAAAGACTCTAC 402 287 749 Antisense
ATCACAAGTTCGCCGAGTTTTTCGA 125 27 776 Antisense
Sequence Source Affymetrix Proprietary Database