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[190157_at] single ankyrin motif

Description ZK1320.7 /REP_DB=WormBase Gene ID /WP=CE01705 /TR=Q09655 /GB=CAA87045.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=single ankyrin motif
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 81      6grp_total > 65      4grp_total > 13      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 235.7
(-1)
P 		222
(-1.4)
P 		158.4
(-3)
P 		391.6
(3)
P 		233
B 274.7
(0.4)
P 		179.8
(-1.6)
P 		114.7
(-3)
P 		397.4
(3)
P 		283
C 293
(1.5)
P 		164.1
(-1.8)
P 		116.7
(-3)
P 		354
(3)
P 		237
avr 267.8
(0.3) 		188.6
(-1.6) 		129.9
(-3) 		381
(3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 277.1
(3)
P 		212.2
(-2.6)
P 		240.7
(-0.2)
P 		259.5
(1.5)
P 		208
(-3)
P 		234.9
(-0.7)
P 		69
B 240.4
(-1.3)
P 		207.3
(-3)
P 		308.8
(2.1)
P 		327.6
(3)
P 		243.3
(-1.2)
P 		315.1
(2.4)
P 		120
C 211.6
(-1.2)
P 		273.6
(1.1)
P 		164.1
(-3)
P 		244
(0)
P 		164.4
(-3)
P 		323.2
(3)
P 		159
avr 243
(-0.4) 		231
(-1.2) 		237.9
(-0.7) 		277
(2) 		205.2
(-3) 		291.1
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 85.8
(3)
P 		48.2
(-2.1)
P 		41.4
(-3)
P 		57.3
(-0.9)
P 		44
B 87.6
(3)
P 		44.4
(-1.2)
P 		26.6
(-3)
P 		84.7
(2.7)
P 		61
C 97
(3)
P 		47.2
(-2.3)
P 		40.7
(-3)
P 		59.7
(-1)
P 		56
avr 90.1
(3) 		46.6
(-1.8) 		36.2
(-3) 		67.2
(0.5) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 51.1
(-3)
P 		75.5
(3)
P 		52.4
(-2.7)
P 		65.8
(0.6)
P 		62.8
(-0.1)
P 		57.2
(-1.5)
P 		24
B 83.6
(-1.2)
P 		69
(-3)
P 		75
(-2.3)
P 		86.8
(-0.8)
P 		98.9
(0.7)
P 		117.5
(3)
P 		49
C 78.4
(0.3)
P 		83.5
(0.8)
P 		41.8
(-3)
P 		49.1
(-2.3)
P 		53.2
(-2)
P 		108.2
(3)
P 		66
avr 71
(-0.7) 		76
(0.1) 		56.4
(-3) 		67.2
(-1.3) 		71.6
(-0.6) 		94.3
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2823
Sequence Type Exemplar sequence
Representative Public ID ZK1320.7 NCBI
Target Description ZK1320.7 /REP_DB=WormBase Gene ID /WP=CE01705 /TR=Q09655 /GB=CAA87045.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=single ankyrin motif
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063686 NCBI Caenorhabditis elegans ZK1320.7 (ZK1320.7) mRNA, complete cds. 11/11 None
SNAP00000038587 ENSEMBL cdna:SNAP chromosome:CEL140:II:9671527:9673152:1 11/11 None
GENEFINDER00000038602 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9671527:9673152:1 11/11 None
ZK1320.7 ENSEMBL cdna:known chromosome:CEL140:II:9671527:9673152:1 gene:ZK1320.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9667725-9673149(+) 100.0 100.0
Public Domain and Genome References
Gene Title single ankyrin motif
Ensembl ZK1320.7
Entrez Gene 259457 Entrez gene
SwissProt Q09655 EMBL-EBI
WormBase CE30717 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16811.1.S1_AT similar to HLA-B associated transcript 4 cfa
CANINE_2:CFAAFFX.1825.1.S1_S_AT similar to HLA-B associated transcript 4 cfa
DROSOPHILA_2:1640101_AT dm
DROSGENOME1:147241_AT dm
HU35KSUBA:RC_AA460293_AT HLA-B associated transcript 4 hs
HU35KSUBD:RC_AA424507_AT HLA-B associated transcript 4 hs
U133_X3P:HS.247478.0.S2_3P_AT HLA-B associated transcript 4 hs
U133_X3P:HS.247478.0.S1_3P_S_AT HLA-B associated transcript 4 hs
HG-U133_PLUS_2:225472_AT HLA-B associated transcript 4 hs
HG-U133B:225472_AT HLA-B associated transcript 4 hs
HG-U133_PLUS_2:225476_AT HLA-B associated transcript 4 hs
HG-U133B:225476_AT HLA-B associated transcript 4 hs
HG-U95B:49509_AT HLA-B associated transcript 4 hs
HG-U95B:56299_AT HLA-B associated transcript 4 hs
MOUSE430_2:1420284_AT HLA-B associated transcript 4 mm
MOE430A:1420284_AT HLA-B associated transcript 4 mm
MOUSE430A_2:1420284_AT HLA-B associated transcript 4 mm
MU11KSUBA:L76155_S_AT HLA-B associated transcript 4 mm
MG-U74AV2:101415_I_AT HLA-B associated transcript 4 mm
MG-U74AV2:101416_F_AT HLA-B associated transcript 4 mm
MG-U74AV2:161235_F_AT HLA-B associated transcript 4 mm
MG-U74CV2:170698_F_AT HLA-B associated transcript 4 mm
MG-U74CV2:170233_AT HLA-B associated transcript 4 mm
MOE430A:1423163_AT HLA-B associated transcript 4 mm
MOUSE430A_2:1423163_AT HLA-B associated transcript 4 mm
MOUSE430_2:1423163_AT HLA-B associated transcript 4 mm
MOUSE430_2:1420284_AT similar to Bat4 protein mm
MOE430A:1420284_AT similar to Bat4 protein mm
MOUSE430A_2:1420284_AT similar to Bat4 protein mm
MG-U74AV2:161235_F_AT similar to Bat4 protein mm
MG-U74CV2:170698_F_AT similar to Bat4 protein mm
MG-U74CV2:170233_AT similar to Bat4 protein mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87045 Hypothetical protein ZK1320.7 [Caenorhabditis elegans] ref|NP_496087.2| ZK1320.7 [Caenorhabditis elegans] sp|Q09655|BAT4_CAEEL BAT4 protein homolog 0.0
blast T27753 hypothetical protein ZK1320.7 - Caenorhabditis elegans 0.0
blast CAE57995 Hypothetical protein CBG01058 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.8E-19
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-9
Sequence
Target Sequence 
>C. ELEGANS:190157_AT
gtccgagactcacacagcttgggaattgtacaaattgcacagaaaaacgggaaaaattat
tttgtgaagcgactttttgactatttctgcaatggtgacactccatccacatcatctgag
cctgaaacactgacattttgcgagctttgtgatgtttttataccgaaaaacgcgtcttca
actcacatttcttccatcactcatcaactcaatgatcgaaatgctcctggagcagcacct
caatctggaattcaaattggaccatcaaacatcggatatagattgatgtgtgcatctggt
tggacagaagaacaaggtcttggaagaaattctgatggtcaaagatttccgattcgaacg
atcctgaagagaaatcgagcgggattaggagctgaaaaacttgtgaaaaaagtcacacat
tttggaccattcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCGAGACTCACACAGCTTGGGAA 203 477 2575 Antisense
AAGCGACTTTTTGACTATTTCTGCA 20 149 2641 Antisense
TGCAATGGTGACACTCCATCCACAT 429 575 2662 Antisense
CATCCACATCATCTGAGCCTGAAAC 557 211 2678 Antisense
GAAACACTGACATTTTGCGAGCTTT 83 357 2698 Antisense
GCGAGCTTTGTGATGTTTTTATACC 604 289 2714 Antisense
GAAAAACGCGTCTTCAACTCACATT 642 355 2739 Antisense
TCTTCCATCACTCATCAACTCAATG 698 617 2764 Antisense
TCAATGATCGAAATGCTCCTGGAGC 229 633 2783 Antisense
GATTTCCGATTCGAACGATCCTGAA 290 427 2918 Antisense
GTCACACATTTTGGACCATTCGATC 276 465 2986 Antisense
Sequence Source Affymetrix Proprietary Database