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[190156_s_at] Acyl-CoA oxidase I

Description C48B4.1 /REP_DB=WormBase Gene ID /WP=CE00491 /TR=SW:P34355 /GB=CAA82376.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Acyl-CoA oxidase I
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 21      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 23      6grp_total > 32      4grp_total > 63      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2592
1 2 3 4 range
A 3366.4
(3)
P 		1932.9
(-1.6)
P 		2405.5
(-0.1)
P 		1512.3
(-3)
P 		1854
B 3931.7
(3)
P 		1668.6
(-2.4)
P 		2600.7
(-0.2)
P 		1439.3
(-3)
P 		2492
C 3413.1
(3)
P 		1836.8
(-1.6)
P 		2587.2
(0.6)
P 		1340.1
(-3)
P 		2073
avr 3570.4
(3) 		1812.8
(-1.9) 		2531.1
(0.1) 		1430.6
(-3) 		2140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2393
1 2 3 4 5 6 range
A 2696.1
(1.7)
P 		2416.2
(0.9)
P 		3147.6
(3)
P 		2068.3
(-0)
P 		1637.2
(-1.3)
P 		1021.7
(-3)
P 		2126
B 2369.5
(0.2)
P 		2522.7
(0.6)
P 		3414.2
(3)
P 		2141.3
(-0.4)
P 		1340
(-2.6)
P 		1189.3
(-3)
P 		2225
C 2193.7
(1)
P 		2427.5
(1.8)
P 		2761.5
(3)
P 		2266.9
(1.3)
P 		1264.4
(-2.3)
P 		1059.5
(-3)
P 		1702
avr 2419.8
(1) 		2455.5
(1.1) 		3107.8
(3) 		2158.8
(0.2) 		1413.9
(-2) 		1090.2
(-3) 		2018
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1032
1 2 3 4 range
A 1225.7
(3)
P 		419.6
(-1.8)
P 		628.9
(-0.6)
P 		221.4
(-3)
P 		1004
B 1253.8
(3)
P 		412.1
(-2.3)
P 		602.6
(-1.1)
P 		306.7
(-3)
P 		947
C 1129.8
(3)
P 		528.1
(-1)
P 		901.7
(1.5)
P 		226
(-3)
P 		904
avr 1203.1
(3) 		453.3
(-1.7) 		711.1
(-0.1) 		251.4
(-3) 		952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 497
(-0.6)
P 		859.3
(3)
P 		685.5
(1.3)
P 		524.6
(-0.3)
P 		494
(-0.6)
P 		248.7
(-3)
P 		611
B 824.5
(2.8)
P 		839.7
(3)
P 		829.1
(2.8)
P 		567.2
(-1.1)
P 		544.4
(-1.5)
P 		443.5
(-3)
P 		396
C 813.1
(3)
P 		740.7
(2.1)
P 		702.9
(1.6)
P 		455.9
(-1.7)
P 		409.1
(-2.3)
P 		354.7
(-3)
P 		458
avr 711.5
(1.7) 		813.2
(3) 		739.2
(2) 		515.9
(-0.8) 		482.5
(-1.3) 		349
(-3) 		464
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190156_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6216
Sequence Type Exemplar sequence
Representative Public ID C48B4.1 NCBI
Target Description C48B4.1 /REP_DB=WormBase Gene ID /WP=CE00491 /TR=SW:P34355 /GB=CAA82376.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Acyl-CoA oxidase I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066718 NCBI Caenorhabditis elegans C48B4.1 (C48B4.1) mRNA, complete cds. 11/11 None
SNAP00000040768 ENSEMBL cdna:SNAP chromosome:CEL140:III:9586609:9595569:-1 11/11 None
GENEFINDER00000040779 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9586609:9595470:-1 11/11 None
C48B4.1.1 ENSEMBL cdna:known chromosome:CEL140:III:9586513:9592088:-1 gene:C48B4.1 11/11 None
C48B4.1.2 ENSEMBL cdna:known chromosome:CEL140:III:9586516:9592090:-1 gene:C48B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9586604-9592075(-) 100.0 100.0
Public Domain and Genome References
Gene Title Acyl-CoA oxidase I
Ensembl C48B4.1
Entrez Gene 176353 Entrez gene
SwissProt P34355 EMBL-EBI
WormBase CE00491 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6635 fatty acid beta-oxidation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3997 acyl-CoA oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82376 Hypothetical protein C48B4.1 [Caenorhabditis elegans] ref|NP_499119.1| C48B4.1 [Caenorhabditis elegans] sp|P34355|ACOX_CAEEL Probable acyl-coenzyme A oxidase, peroxisomal (Acyl-CoA oxidase) (AOX) 0.0
blast CAE65171 Hypothetical protein CBG10043 [Caenorhabditis briggsae] 0.0
blast CAA82377 Hypothetical protein C48B4.2 [Caenorhabditis elegans] ref|NP_499120.2| C48B4.2 [Caenorhabditis elegans] sp|P34356|ROM2_CAEEL Rhomboid related protein 0.0
Protein Families
Method ID Description E-Value
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 4.0E-82
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 9.0E-86
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 1.9E-64
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.3E-5
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 1.9E-64
Pfam IPR002610 EMBL-EBI Peptidase S54, rhomboid-like protein 3.6E-38
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.3E-5
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 1.9E-64
Pfam IPR002610 EMBL-EBI Peptidase S54, rhomboid-like protein 3.6E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000040768 6 152-174,206-228,238-257,262-284,294-316,323-345
GENEFINDER00000040779 7 119-141,180-202,207-224,228-250,263-282,292-309,321-343
Sequence
Target Sequence 
>C. ELEGANS:190156_S_AT
tcgcaaagatgctcagccacttcgagcacattgcacgtcatcgtgtaatgcatgcttatc
gtcaaatgattgaagaagagaaacagggaatcgagagagattatgcttttgcaaatcatt
cagttgactggactaaggctgctcgtgctcatacaaagttgtttatcgcccgtggtttcg
tgaaaagtgtgcaggaagttagtgatgaagcagttcatgatgtacttacaacacttgctg
aactctatctctcttatgaacttattgaaatgtcggctgatttgacagctaatggatatc
tttccgaatcggatgtccaacaaattcgacatcaaatctacgattcaatgagaaaaactc
gccgcaatgctgtttcaattgtcgactcatttgatatttgtgatcgagagcttcgttcag
tactcggtcgccgtgatggacatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCAAAGATGCTCAGCCACTTCGA 302 601 1448 Antisense
CACTTCGAGCACATTGCACGTCATC 162 197 1465 Antisense
GCACGTCATCGTGTAATGCATGCTT 680 315 1480 Antisense
TTGACTGGACTAAGGCTGCTCGTGC 522 703 1571 Antisense
GCTGCTCGTGCTCATACAAAGTTGT 204 297 1585 Antisense
TTATCGCCCGTGGTTTCGTGAAAAG 662 679 1610 Antisense
ACAACACTTGCTGAACTCTATCTCT 546 111 1675 Antisense
GAACTCTATCTCTCTTATGAACTTA 378 349 1687 Antisense
AAAACTCGCCGCAATGCTGTTTCAA 442 131 1801 Antisense
TGCTGTTTCAATTGTCGACTCATTT 318 581 1815 Antisense
TACTCGGTCGCCGTGATGGACATGT 614 645 1868 Antisense
Sequence Source Affymetrix Proprietary Database