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[190155_at]

Description C47C12.3 /REP_DB=WormBase Gene ID /WP=CE08796 /TR=Q94178 /GB=AAB07570.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 16      4grp_total > 45      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 131.8
(-0.6)
P 		206
(3)
P 		81.7
(-3)
A 		126.6
(-0.8)
A 		124
B 188.7
(3)
P 		137
(-0.3)
P 		127.3
(-0.9)
A 		93.4
(-3)
A 		95
C 169.5
(3)
P 		136
(0.5)
P 		87.9
(-3)
P 		101.3
(-2)
M 		82
avr 163.3
(3) 		159.7
(2.7) 		99
(-3) 		107.1
(-2.2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 215.1
(3)
A 		136.1
(0)
P 		119.8
(-0.6)
P 		56.1
(-3)
A 		104.2
(-1.2)
M 		98
(-1.4)
P 		159
B 157.6
(3)
P 		117.6
(0.7)
P 		77.1
(-1.6)
P 		77.4
(-1.6)
P 		52.2
(-3)
M 		106.3
(0.1)
P 		105
C 187.5
(3)
P 		188.1
(3)
P 		78.6
(-3)
P 		94.5
(-2.1)
P 		87.5
(-2.5)
A 		85.1
(-2.6)
P 		110
avr 186.7
(3) 		147.3
(0.9) 		91.8
(-2.1) 		76
(-3) 		81.3
(-2.7) 		96.5
(-1.9) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 48
(3)
P 		44.7
(2.3)
P 		21.4
(-2.4)
A 		18.5
(-3)
A 		30
B 60.2
(3)
P 		33.8
(-0.9)
P 		29.5
(-1.6)
A 		19.9
(-3)
A 		40
C 56.1
(3)
P 		39.1
(0.4)
P 		30.6
(-0.9)
P 		17.1
(-3)
M 		39
avr 54.8
(3) 		39.2
(0.4) 		27.2
(-1.6) 		18.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 39.7
(1.5)
A 		48.4
(3)
P 		26.1
(-0.9)
P 		14.2
(-3)
A 		31.5
(0)
M 		23.9
(-1.3)
P 		34
B 54.8
(3)
P 		39.2
(0.4)
P 		18.7
(-3)
P 		20.5
(-2.7)
P 		21.2
(-2.6)
M 		39.6
(0.5)
P 		36
C 69.5
(3)
P 		57.4
(1.6)
P 		20
(-2.9)
P 		19
(-3)
P 		28.3
(-1.9)
A 		28.5
(-1.9)
P 		51
avr 54.7
(3) 		48.3
(2) 		21.6
(-2.4) 		17.9
(-3) 		27
(-1.5) 		30.7
(-0.9) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16313
Sequence Type Exemplar sequence
Representative Public ID C47C12.3 NCBI
Target Description C47C12.3 /REP_DB=WormBase Gene ID /WP=CE08796 /TR=Q94178 /GB=AAB07570.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029307(11), NM_001029306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029307 NCBI Caenorhabditis elegans REgulator of Fusion family member (ref-2) (ref-2) mRNA, complete cds. 11/11 None
NM_001029306 NCBI Caenorhabditis elegans REgulator of Fusion family member (ref-2) (ref-2) mRNA, complete cds. 11/11 None
GENEFINDER00000037141 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7745759:7749369:1 10/11 None
SNAP00000037133 ENSEMBL cdna:SNAP chromosome:CEL140:X:7747912:7749369:1 9/11 None
C47C12.3b ENSEMBL cdna:known chromosome:CEL140:X:7744178:7749906:1 gene:C47C12.3 11/11 None
C47C12.3a.1 ENSEMBL cdna:known chromosome:CEL140:X:7745736:7749949:1 gene:C47C12.3 11/11 None
C47C12.3a.2 ENSEMBL cdna:known chromosome:CEL140:X:7745754:7749369:1 gene:C47C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7744155-7749368(+) 100.0 100.0
Public Domain and Genome References
Ensembl C47C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ65207 Regulator of fusion protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024478.1| REgulator of Fusion family member (ref-2) [Caenorhabditis elegans] 0.0
blast AAM55473 zinc finger protein REF-2 [Caenorhabditis elegans] 0.0
blast AAB07570 Regulator of fusion protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024477.1| REgulator of Fusion family member (ref-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:190155_AT
gagtgcacactggagaacgtccgtttttatgcgatgtttgcaacaaagtgttcgcaagat
ccgagaatctaaaaatccacaaacgaattcactcaggagagaaaccattccaatgcacac
ataatggatgcacaaaactgttcgccaactcttcagatcgcaagaagcatatgcatgtac
attctagtcacaaaccttatagttgtatgtacccagattgtggaaaaacgtacacgcatc
caagctcgttgcgcaaacacaccaaggttcatgaaaacgaaaaaaagagtcaattgtctc
cggaacatgacgagagtagcgattcgggaaatgcgtcaatcggaacaccaaccaccgacg
agagcttgaccttctctcctgaaaacattaaacgggatcaacatcttcatacgatgcaca
cgtttatggatcgacccaatccttttatgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGCACACTGGAGAACGTCCGTT 205 401 464 Antisense
GAACGTCCGTTTTTATGCGATGTTT 53 349 478 Antisense
GATGCACAAAACTGTTCGCCAACTC 458 411 590 Antisense
TTCGCCAACTCTTCAGATCGCAAGA 640 697 604 Antisense
CGTACACGCATCCAAGCTCGTTGCG 481 243 692 Antisense
GTTGCGCAAACACACCAAGGTTCAT 562 413 711 Antisense
ATGCGTCAATCGGAACACCAACCAC 492 41 794 Antisense
CACCGACGAGAGCTTGACCTTCTCT 157 197 816 Antisense
TTGACCTTCTCTCCTGAAAACATTA 158 703 829 Antisense
GATGCACACGTTTATGGATCGACCC 366 413 876 Antisense
GATCGACCCAATCCTTTTATGCAAA 295 413 892 Antisense
Sequence Source Affymetrix Proprietary Database