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[190153_s_at]

Description T01B11.2 /REP_DB=WormBase Gene ID /WP=CE12894 /TR=SW:P91408 /GB=AAB37999.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=aminotransferase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 53      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 759
1 2 3 4 range
A 1580.1
(3)
P 		1521.4
(2.5)
P 		1216.3
(0.1)
P 		839.2
(-3)
P 		741
B 1496.8
(3)
P 		1419.2
(2.3)
P 		1246.1
(0.7)
P 		841.5
(-3)
P 		655
C 1598.4
(3)
P 		1364.6
(0.7)
P 		1174
(-1.1)
P 		976.7
(-3)
P 		622
avr 1558.4
(3) 		1435.1
(1.9) 		1212.1
(-0.1) 		885.8
(-3) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 866
1 2 3 4 5 6 range
A 597
(-3)
P 		731.3
(-2)
P 		1011.6
(0.1)
P 		1401.3
(3)
P 		933.1
(-0.5)
P 		1000.1
(0)
P 		804
B 640.2
(-3)
P 		821.5
(-1.3)
P 		1177.1
(2.1)
P 		1277.1
(3)
P 		1231.9
(2.6)
P 		1060.6
(1)
P 		637
C 627.3
(-3)
P 		796.4
(-1.8)
P 		999.8
(-0.3)
P 		1462.7
(3)
P 		913.8
(-0.9)
P 		1091.3
(0.3)
P 		835
avr 621.5
(-3) 		783.1
(-1.7) 		1062.8
(0.5) 		1380.4
(3) 		1026.3
(0.2) 		1050.7
(0.4) 		759
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 575.3
(3)
P 		330.3
(-0.2)
P 		318
(-0.4)
P 		122.8
(-3)
P 		453
B 477.3
(3)
P 		350.5
(0.4)
P 		288.8
(-0.8)
P 		179.3
(-3)
P 		298
C 529.1
(3)
P 		392.3
(0.7)
P 		409.2
(1)
P 		164.7
(-3)
P 		364
avr 527.2
(3) 		357.7
(0.3) 		338.7
(-0) 		155.6
(-3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 110.1
(-3)
P 		260.1
(0.7)
P 		220.3
(-0.3)
P 		355.4
(3)
P 		281.6
(1.2)
P 		243.5
(0.3)
P 		245
B 222.8
(-3)
P 		273.5
(-1.9)
P 		285.8
(-1.6)
P 		338.3
(-0.5)
P 		500.5
(3)
P 		395.5
(0.7)
P 		278
C 232.5
(-3)
P 		243
(-2.5)
P 		254.5
(-2)
P 		294.2
(-0.2)
P 		295.7
(-0.1)
P 		365.3
(3)
P 		133
avr 188.5
(-3) 		258.9
(-0.5) 		253.5
(-0.7) 		329.3
(1.9) 		359.3
(3) 		334.8
(2.1) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190153_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8720
Sequence Type Exemplar sequence
Representative Public ID T01B11.2 NCBI
Target Description T01B11.2 /REP_DB=WormBase Gene ID /WP=CE12894 /TR=SW:P91408 /GB=AAB37999.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=aminotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028175 NCBI Caenorhabditis elegans T01B11.2a (aminotransferase) mRNA, complete cds. 11/11 None
SNAP00000008416 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8449440:8451734:-1 11/11 None
GENEFINDER00000008423 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8449440:8451734:-1 11/11 None
T01B11.2b ENSEMBL cdna:known chromosome:CEL140:IV:8449349:8451741:-1 gene:T01B11.2 11/11 None
T01B11.2a ENSEMBL cdna:known chromosome:CEL140:IV:8449359:8451741:-1 gene:T01B11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177646 2 1 NM_001028175 190153_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8449445-8451740(-) 100.0 100.0
Public Domain and Genome References
Ensembl T01B11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37999 Hypothetical protein T01B11.2a [Caenorhabditis elegans] ref|NP_001023346.1| T01B11.2a [Caenorhabditis elegans] sp|P91408|YO1J_CAEEL Probable aminotransferase T01B11.2 0.0
blast CAE71538 Hypothetical protein CBG18478 [Caenorhabditis briggsae] 0.0
blast AAH58592 Alanine-glyoxylate aminotransferase 2-like 1 [Mus musculus] dbj|BAC33993.1| unnamed protein product [Mus musculus] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR005814 EMBL-EBI Aminotransferase class-III 4.3E-20
Pfam IPR005814 EMBL-EBI Aminotransferase class-III 3.6E-24
Pfam IPR005814 EMBL-EBI Aminotransferase class-III 3.8E-66
Sequence
Target Sequence 
>C. ELEGANS:190153_S_AT
gatgtagccacccatgtcagaaatcatggaggtctcatgattatcgatgaagtacagact
ggatttggaagaattggaagaaagtattgggcccatcagttgtatgatgacggatttttg
cccgatattgtgacaatgggtaaaccaatgggaaatgggttcccagtctctgcagttgcg
acaagaaaggagattgcggatgctttgggtggagaagttggatattttaacacatacggg
ggaaacccagtggcgtgtgcagcagttatctcggtgatgaaagtggtaaaggacgagaat
cttttagagcacagtcaacaaatgggagagaagcttgaagttgctctcagagatttgcaa
aagaaacatgaatgtatcggagatatcagaggagttggtcttttctggggaatcgatttg
gtcaaggatagaaatactcgtgaacccgatcaaaaactcgcaatcgccacaattttggct
ctccgaaaaagttacggaattcttttgaacgctgatggtccacacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTAGCCACCCATGTCAGAAATC 586 409 790 Antisense
GAAAGTATTGGGCCCATCAGTTGTA 252 359 869 Antisense
GATGACGGATTTTTGCCCGATATTG 137 411 895 Antisense
GAAATGGGTTCCCAGTCTCTGCAGT 246 361 941 Antisense
GGAGATTGCGGATGCTTTGGGTGGA 146 519 978 Antisense
TACGGGGGAAACCCAGTGGCGTGTG 318 647 1024 Antisense
GTGTGCAGCAGTTATCTCGGTGATG 320 487 1044 Antisense
GAAGCTTGAAGTTGCTCTCAGAGAT 604 341 1119 Antisense
GAGGAGTTGGTCTTTTCTGGGGAAT 620 403 1178 Antisense
ATCGCCACAATTTTGGCTCTCCGAA 415 37 1252 Antisense
TTTTGAACGCTGATGGTCCACACAC 655 677 1292 Antisense
Sequence Source Affymetrix Proprietary Database