[Home] | [Total List]

[190152_at] Lectin C-type domain

Description Y17D7B.6 /REP_DB=WormBase Gene ID /WP=CE16595 /TR=O62406 /GB=CAA16303.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 84      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 11
(-1.8)
A 		29.5
(3)
A 		11
(-1.8)
A 		6.6
(-3)
A 		23
B 3.6
(-3)
A 		59.6
(3)
A 		4.4
(-2.9)
A 		5.4
(-2.8)
A 		56
C 18.7
(-1)
A 		13.3
(-3)
A 		22.6
(0.4)
A 		29.6
(3)
A 		16
avr 11.1
(-3) 		34.1
(3) 		12.7
(-2.6) 		13.9
(-2.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 45.9
(1.3)
A 		3.2
(-3)
A 		63
(3)
A 		9.9
(-2.3)
A 		48.6
(1.6)
A 		2.9
(-3)
A 		60
B 13.5
(-3)
A 		16.7
(-2.4)
A 		15.3
(-2.7)
A 		15.9
(-2.6)
A 		34.5
(0.8)
A 		46.5
(3)
A 		33
C 11
(-2)
A 		6.1
(-3)
A 		9.6
(-2.3)
A 		29.3
(1.5)
A 		15
(-1.3)
A 		37
(3)
A 		31
avr 23.5
(0.7) 		8.7
(-3) 		29.3
(2.2) 		18.4
(-0.6) 		32.7
(3) 		28.8
(2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4
(0.3)
A 		6.4
(3)
A 		2.9
(-0.9)
A 		1
(-3)
A 		5
B 1.2
(-2.9)
A 		14.7
(3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		14
C 6.2
(0.5)
A 		3.8
(-3)
A 		7.9
(3)
A 		5
(-1.2)
A 		4
avr 3.8
(-1.6) 		8.3
(3) 		3.9
(-1.5) 		2.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.5
(0.3)
A 		1.2
(-2.8)
A 		13.7
(2.6)
A 		2.5
(-2.2)
A 		14.7
(3)
A 		0.7
(-3)
A 		14
B 4.7
(-2.6)
A 		5.6
(-2.2)
A 		3.7
(-3)
A 		4.2
(-2.8)
A 		14
(1.5)
A 		17.4
(3)
A 		14
C 4.1
(-1.7)
A 		1.9
(-3)
A 		2.4
(-2.7)
A 		5.9
(-0.7)
A 		4.9
(-1.3)
A 		12.4
(3)
A 		11
avr 5.8
(-0.9) 		2.9
(-3) 		6.6
(-0.3) 		4.2
(-2.1) 		11.2
(3) 		10.2
(2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13795
Sequence Type Exemplar sequence
Representative Public ID Y17D7B.6 NCBI
Target Description Y17D7B.6 /REP_DB=WormBase Gene ID /WP=CE16595 /TR=O62406 /GB=CAA16303.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075265 NCBI Caenorhabditis elegans Y17D7B.6 (Y17D7B.6) mRNA, complete cds. 11/11 None
SNAP00000003519 ENSEMBL cdna:SNAP chromosome:CEL140:V:18775635:18776598:1 10/11 None
GENEFINDER00000003525 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18774264:18778769:1 11/11 None
Y17D7B.6 ENSEMBL cdna:known chromosome:CEL140:V:18774264:18776598:1 gene:Y17D7B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18774263-18776598(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl Y17D7B.6
Entrez Gene 189450 Entrez gene
SwissProt O62406 EMBL-EBI
WormBase CE16595 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 0.0
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 1.0E-111
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 4.0E-95
blast CAA16302 Hypothetical protein Y17D7B.5 [Caenorhabditis elegans] ref|NP_507667.1| Y17D7B.5 [Caenorhabditis elegans] 6.0E-59
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 3.0E-55
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 4.0E-53
blast CAB04098 Hypothetical protein F11D11.6 [Caenorhabditis elegans] ref|NP_507660.1| F11D11.6 [Caenorhabditis elegans] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:190152_AT
ggctgaatggactgatgcctccaacatcccgaataacacgtgtccggatacatttactaa
catcaagttttcctacacctccccagctacaggtgacacctactccttcaagaaaaactc
tactggcttgagctacacgtcttgtaagactgactggaagcggtttgagcgtgccgatgg
gacatttgtgtgtatgaatattgttttgtcgaatggaaccacgtataccaaggctcagga
gagatgtcaagagctgggaggaactgtgacaggtgtggcgtcggtggaagaatccaagtt
tctacagaccaaggtccctgggcctcaaccaaaaggcttctggattggcggaggcagaaa
ctgcccaactgttccgtgctccagttttcgttgggtagacggttacactacaagttacga
tgccctggttcccagtaacgccgctttgacggtctctaagaacactgacgccaactctga
gaactatctaaccgtttttgcctcaaatggcactccccttacaattaacgatattaatca
agacttcacgtctcttatcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGAATGGACTGATGCCTCCAAC 67 541 579 Antisense
GGTTTGAGCGTGCCGATGGGACATT 683 503 740 Antisense
GGAACCACGTATACCAAGGCTCAGG 105 531 793 Antisense
TTCTACAGACCAAGGTCCCTGGGCC 96 691 878 Antisense
AAAGGCTTCTGGATTGGCGGAGGCA 433 119 910 Antisense
ACTACAAGTTACGATGCCCTGGTTC 606 99 985 Antisense
TAACGCCGCTTTGACGGTCTCTAAG 283 639 1014 Antisense
GAACTATCTAACCGTTTTTGCCTCA 516 349 1059 Antisense
GTTTTTGCCTCAAATGGCACTCCCC 554 449 1072 Antisense
GCACTCCCCTTACAATTAACGATAT 579 315 1088 Antisense
TCAAGACTTCACGTCTCTTATCGTT 207 631 1116 Antisense
Sequence Source Affymetrix Proprietary Database