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[190150_at] zinc finger protein

Description C27A12.3 /REP_DB=WormBase Gene ID /WP=CE08412 /TR=O01960 /GB=AAB93641.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 06      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_total > 09      4grp_total > 22      6grp_cgc > 10      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 122
(0.4)
P 		86.7
(-2)
P 		72.7
(-3)
P 		158.9
(3)
P 		86
B 138.3
(3)
P 		101.2
(-3)
P 		119.6
(-0)
P 		109.2
(-1.7)
P 		37
C 168.1
(3)
P 		122.1
(-0.8)
P 		95.1
(-3)
P 		160.1
(2.3)
P 		73
avr 142.8
(3) 		103.3
(-2) 		95.8
(-3) 		142.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 192.5
(3)
P 		122.1
(-1.8)
P 		126.4
(-1.5)
P 		104.5
(-3)
P 		134.1
(-1)
P 		114.4
(-2.3)
P 		88
B 101.1
(-1.5)
P 		125.1
(1.3)
P 		139.4
(3)
P 		88.4
(-3)
P 		136.7
(2.7)
P 		135
(2.5)
P 		51
C 159.8
(3)
P 		100.8
(-2.6)
P 		120.3
(-0.8)
M 		156.5
(2.7)
P 		100.5
(-2.7)
P 		96.9
(-3)
P 		63
avr 151.1
(3) 		116
(-2.9) 		128.7
(-0.8) 		116.5
(-2.8) 		123.8
(-1.6) 		115.4
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 44.4
(3)
P 		18.8
(-3)
P 		19
(-3)
P 		23.3
(-1.9)
P 		26
B 44.1
(3)
P 		25
(-2.5)
P 		27.7
(-1.7)
P 		23.3
(-3)
P 		21
C 55.6
(3)
P 		35.1
(-1.3)
P 		33.2
(-1.7)
P 		27
(-3)
P 		29
avr 48
(3) 		26.3
(-2.5) 		26.6
(-2.5) 		24.5
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 35.5
(0.2)
P 		43.4
(3)
P 		27.5
(-2.6)
P 		26.5
(-3)
P 		40.5
(2)
P 		27.9
(-2.5)
P 		17
B 35.2
(-0.8)
P 		41.6
(0.4)
P 		33.9
(-1)
P 		23.4
(-3)
P 		55.5
(3)
P 		50.4
(2)
P 		32
C 59.2
(3)
P 		30.7
(-3)
P 		30.6
(-3)
M 		31.5
(-2.8)
P 		32.5
(-2.6)
P 		32.4
(-2.6)
P 		29
avr 43.3
(3) 		38.6
(1.3) 		30.7
(-1.7) 		27.1
(-3) 		42.8
(2.8) 		36.9
(0.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1961
Sequence Type Exemplar sequence
Representative Public ID C27A12.3 NCBI
Target Description C27A12.3 /REP_DB=WormBase Gene ID /WP=CE08412 /TR=O01960 /GB=AAB93641.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059343 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-146) (tag-146) mRNA, complete cds. 11/11 None
GENEFINDER00000016782 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6046566:6049387:1 11/11 None
C27A12.3 ENSEMBL cdna:known chromosome:CEL140:I:6046541:6049400:1 gene:C27A12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016768 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6046565-6049599(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol tag-146
Ensembl C27A12.3
Entrez Gene 182953 Entrez gene
SwissProt O01960 EMBL-EBI
WormBase CE38999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93641 Temporarily assigned gene name protein 146 [Caenorhabditis elegans] ref|NP_491744.2| Temporarily Assigned Gene name family member (tag-146) [Caenorhabditis elegans] 0.0
blast CAE74376 Hypothetical protein CBG22102 [Caenorhabditis briggsae] 1.0E-129
blast CAE74376 Hypothetical protein CBG22102 [Caenorhabditis briggsae] 1.0E-124
blast XP_688488 PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein HZF7) (Zinc finger protein ZNFphex133) [Danio rerio] 2.0E-32
blast XP_879057 PREDICTED: similar to zinc finger protein 569 isoform 6 [Bos taurus] 5.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.7E-5
Sequence
Target Sequence 
>C. ELEGANS:190150_AT
gtcgaatgcatactggagaacgtccatttgaatgtacttggagatgtggattgtcttttg
taacggattctgttagaaaagaacatgaaatgactgtacacactggtataaaacgttaca
catgcgttgtaaaaggatgtaatgcagtatttgctcgtcgtgtatatctcatgagacatc
gaaaaaatgcacatcccgagctcttcacaccaattttcgatcatgttcaagtgaatcacg
aggaatcacaggattcagttattgtttatgaagatgatcatgaacagaacaatcagatta
taatgctcactggtgatggtgatgacgtcaagatcttggctcattttgaagatgatgaag
aggaatttgtggagcaaggaggaagcatggaagatcaaaaaactgcaacttatagggtaa
ctagcattttctacttcatatattcagttttctattccacccagcaattagtttttaaaa
tggaagagttattcaaatttcaaatttctaggccactattaaattttgcattttttaacc
atttttttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAATGCATACTGGAGAACGTCC 328 475 1010 Antisense
GATTGTCTTTTGTAACGGATTCTGT 299 435 1058 Antisense
GCAGTATTTGCTCGTCGTGTATATC 77 313 1153 Antisense
GAAAAAATGCACATCCCGAGCTCTT 282 355 1190 Antisense
GCTCTTCACACCAATTTTCGATCAT 307 301 1209 Antisense
GGTGATGACGTCAAGATCTTGGCTC 487 499 1327 Antisense
GGGTAACTAGCATTTTCTACTTCAT 88 497 1424 Antisense
CATATATTCAGTTTTCTATTCCACC 288 215 1446 Antisense
TTCTATTCCACCCAGCAATTAGTTT 320 689 1459 Antisense
AATTTCAAATTTCTAGGCCACTATT 467 173 1505 Antisense
TGCATTTTTTAACCATTTTTTTCAT 503 577 1536 Antisense
Sequence Source Affymetrix Proprietary Database