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[190149_at] placental protein 11

Description K02A11.3 /REP_DB=WormBase Gene ID /WP=CE06057 /TR=Q21109 /GB=CAA99880.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=placental protein 11
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 42      6grp_total > 41      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 550
1 2 3 4 range
A 933.9
(3)
P 		504
(-1.9)
P 		453.2
(-2.5)
P 		410.3
(-3)
P 		524
B 859.7
(3)
P 		649.8
(0.1)
P 		516.8
(-1.7)
P 		425.8
(-3)
P 		434
C 935.3
(3)
P 		515.9
(-1.6)
P 		659.3
(-0)
P 		385.5
(-3)
P 		550
avr 909.6
(3) 		556.6
(-1.2) 		543.1
(-1.4) 		407.2
(-3) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 776
1 2 3 4 5 6 range
A 872
(0.2)
P 		918.5
(0.6)
P 		1229.9
(3)
P 		1206.7
(2.8)
P 		766.7
(-0.6)
P 		457.6
(-3)
P 		772
B 1068
(2.2)
P 		918.9
(0.9)
P 		1167.9
(3)
P 		1031
(1.8)
P 		860
(0.4)
P 		454
(-3)
P 		714
C 1124.1
(2.7)
P 		926
(0.9)
P 		1007.8
(1.6)
P 		1160.4
(3)
P 		889.7
(0.5)
P 		505.6
(-3)
P 		655
avr 1021.4
(2) 		921.1
(1.1) 		1135.2
(3) 		1132.7
(3) 		838.8
(0.3) 		472.4
(-3) 		663
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 340
(3)
P 		109.4
(-1.9)
P 		118.5
(-1.7)
P 		60.1
(-3)
P 		280
B 274.2
(3)
P 		160.5
(-0.7)
P 		119.8
(-2)
P 		90.7
(-3)
P 		184
C 309.6
(3)
P 		148.3
(-1)
P 		229.8
(1)
P 		65
(-3)
P 		245
avr 307.9
(3) 		139.4
(-1.3) 		156
(-0.9) 		71.9
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 160.7
(-1.6)
P 		326.7
(3)
P 		267.8
(1.4)
P 		306
(2.4)
P 		231.4
(0.3)
P 		111.4
(-3)
P 		215
B 371.6
(3)
P 		305.9
(1.1)
P 		283.6
(0.4)
P 		273.1
(0.1)
P 		349.4
(2.3)
P 		169.3
(-3)
P 		202
C 416.6
(3)
P 		282.6
(-0.3)
P 		256.5
(-0.9)
P 		233.4
(-1.4)
P 		287.9
(-0.1)
P 		169.3
(-3)
P 		247
avr 316.3
(3) 		305.1
(2.6) 		269.3
(1.3) 		270.8
(1.4) 		289.6
(2) 		150
(-3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1315
Sequence Type Exemplar sequence
Representative Public ID K02A11.3 NCBI
Target Description K02A11.3 /REP_DB=WormBase Gene ID /WP=CE06057 /TR=Q21109 /GB=CAA99880.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=placental protein 11
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060189 NCBI Caenorhabditis elegans K02A11.3 (K02A11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000037759 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9754159:9756037:-1 11/11 None
SNAP00000037754 ENSEMBL cdna:SNAP chromosome:CEL140:I:9754520:9755590:-1 10/11 None
K02A11.3 ENSEMBL cdna:known chromosome:CEL140:I:9754159:9756037:-1 gene:K02A11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9754089-9755968(-) 100.0 100.0
Public Domain and Genome References
Gene Title placental protein 11
Ensembl K02A11.3
Entrez Gene 186864 Entrez gene
SwissProt Q21109 EMBL-EBI
WormBase CE06057 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14513.1.S1_S_AT similar to Placental protein 11 precursor (PP11) cfa
CHICKEN:GGAAFFX.21909.1.S1_AT similar to Placental protein 11 precursor (PP11) gga
HG-U133_PLUS_2:206605_AT 26 serine protease hs
HG-U133A:206605_AT 26 serine protease hs
HG-FOCUS:206605_AT 26 serine protease hs
HG-U133A_2:206605_AT 26 serine protease hs
HU35KSUBD:RC_AA455089_S_AT 26 serine protease hs
HUGENEFL:M32402_AT 26 serine protease hs
U133_X3P:G5174622_3P_AT 26 serine protease hs
HG-U95AV2:37093_AT 26 serine protease hs
MOUSE430_2:1449938_AT placental protein 11 related mm
MOE430A:1449938_AT placental protein 11 related mm
MOUSE430A_2:1449938_AT placental protein 11 related mm
MU11KSUBA:M95545_S_AT placental protein 11 related mm
MG-U74AV2:102203_AT placental protein 11 related mm
MOE430A:1449937_AT placental protein 11 related mm
MOUSE430A_2:1449937_AT placental protein 11 related mm
MOUSE430_2:1449937_AT placental protein 11 related mm
Protein Similarities
Method ID Description E-Value
blast CAA99880 Hypothetical protein K02A11.3 [Caenorhabditis elegans] ref|NP_492590.1| K02A11.3 [Caenorhabditis elegans] 1.0E-179
blast CAE60237 Hypothetical protein CBG03809 [Caenorhabditis briggsae] 1.0E-155
blast CAA99880 Hypothetical protein K02A11.3 [Caenorhabditis elegans] ref|NP_492590.1| K02A11.3 [Caenorhabditis elegans] 1.0E-118
blast CAE60237 Hypothetical protein CBG03809 [Caenorhabditis briggsae] 1.0E-105
blast XP_603752 PREDICTED: similar to Placental protein 11 precursor (PP11) [Bos taurus] 2.0E-41
Sequence
Target Sequence 
>C. ELEGANS:190149_AT
tgagccacgtgttagccaagctgaagagaaaaatgaagttggaaagtttttggactatgt
gttagagtcacgtccaatgcaggaactatataattggtttaaagctaaaggtcatccaat
cgccacaagcccccaagtatttcggttctggattggacaactttggttttcacactactc
aagagctttgggacgcccggatacttcagggtttgaacatgtttttattggagaagcaaa
aaatggtgaaatctctggaatgcataattgggttagattctacgtgttagagaataatcg
aaccgagaattttgattataaaggattcactgtaaaaagattcaacataatggctgcact
aaaattcacatgggacggcctcttgaaacgagctggctcaattctaattggaacatctcc
agaatttgatatggctctgtatacaatgtgttttttgtcaagaagaggaagagagacttg
tgatgttgaattcgacggatgtccacttcaaatcacaagttttgaaattatgcaacagaa
taaggtgtacattgggagtatctatccaacagctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCACGTGTTAGCCAAGCTGAA 691 567 318 Antisense
TGTTAGAGTCACGTCCAATGCAGGA 433 559 377 Antisense
AGCTAAAGGTCATCCAATCGCCACA 679 73 420 Antisense
GCCCCCAAGTATTTCGGTTCTGGAT 334 281 446 Antisense
ACAACTTTGGTTTTCACACTACTCA 113 109 474 Antisense
CTACTCAAGAGCTTTGGGACGCCCG 561 223 492 Antisense
GACGCCCGGATACTTCAGGGTTTGA 616 377 509 Antisense
AAAATTCACATGGGACGGCCTCTTG 612 131 678 Antisense
ACGGCCTCTTGAAACGAGCTGGCTC 44 97 692 Antisense
TCGACGGATGTCCACTTCAAATCAC 359 601 809 Antisense
TGGGAGTATCTATCCAACAGCTGGA 28 555 870 Antisense
Sequence Source Affymetrix Proprietary Database