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[190147_at] zinc finger protein

Description F59E11.8 /REP_DB=WormBase Gene ID /WP=CE11510 /TR=Q22556 /GB=AAG24144.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 35      4grp_total > 22      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 67.4
(3)
A 		44.7
(0.3)
A 		16.1
(-3)
A 		64.6
(2.7)
A 		51
B 83.1
(3)
A 		26.5
(-3)
A 		34.8
(-2.1)
A 		60.8
(0.6)
A 		57
C 89.6
(0.5)
P 		21.5
(-3)
A 		30.4
(-2.5)
A 		137.4
(3)
P 		116
avr 80
(2.2) 		30.9
(-2.6) 		27.1
(-3) 		87.6
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 86.3
(3)
A 		73
(1.9)
A 		67.8
(1.5)
P 		13.6
(-3)
A 		37.4
(-1)
A 		44.5
(-0.4)
A 		73
B 72.9
(3)
A 		66.8
(2.5)
A 		56.4
(1.5)
A 		33
(-0.5)
A 		4.7
(-3)
A 		37
(-0.2)
A 		68
C 53.1
(3)
A 		51.4
(2.7)
A 		45.3
(1.7)
A 		15.9
(-3)
A 		49.8
(2.5)
A 		43.3
(1.4)
A 		37
avr 70.8
(3) 		63.7
(2.1) 		56.5
(1.3) 		20.8
(-3) 		30.6
(-1.8) 		41.6
(-0.5) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 24.5
(3)
A 		9.7
(-1.4)
A 		4.2
(-3)
A 		9.5
(-1.4)
A 		20
B 26.5
(3)
A 		6.5
(-3)
A 		8.1
(-2.5)
A 		13
(-1.1)
A 		20
C 29.7
(3)
P 		6.2
(-3)
A 		10.6
(-1.9)
A 		23.2
(1.3)
P 		24
avr 26.9
(3) 		7.5
(-3) 		7.6
(-3) 		15.2
(-0.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.9
(0.3)
A 		25.9
(3)
A 		14.8
(0)
P 		3.5
(-3)
A 		11.3
(-0.9)
A 		10.8
(-1)
A 		22
B 25.4
(3)
A 		22.2
(2.2)
A 		13.7
(0)
A 		8.8
(-1.2)
A 		1.9
(-3)
A 		13.8
(0)
A 		24
C 19.7
(3)
A 		15.7
(1.5)
A 		11.5
(0)
A 		3.2
(-3)
A 		16.1
(1.7)
A 		14.5
(1.1)
A 		17
avr 20.3
(2.6) 		21.3
(3) 		13.3
(0) 		5.2
(-3) 		9.8
(-1.3) 		13
(-0.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11395
Sequence Type Exemplar sequence
Representative Public ID F59E11.8 NCBI
Target Description F59E11.8 /REP_DB=WormBase Gene ID /WP=CE11510 /TR=Q22556 /GB=AAG24144.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072914 NCBI Caenorhabditis elegans F59E11.8 (F59E11.8) mRNA, complete cds. 11/11 None
SNAP00000037875 ENSEMBL cdna:SNAP chromosome:CEL140:V:8971324:8972836:-1 10/11 None
GENEFINDER00000037893 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8971367:8977513:-1 11/11 None
F59E11.8 ENSEMBL cdna:known chromosome:CEL140:V:8971324:8972541:-1 gene:F59E11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8971324-8972837(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-194
Ensembl F59E11.8
Entrez Gene 186624 Entrez gene
SwissProt Q22556 EMBL-EBI
WormBase CE35890 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24148 Hypothetical protein F59E11.10 [Caenorhabditis elegans] ref|NP_505316.1| F59E11.10 [Caenorhabditis elegans] 0.0
blast AAG24145 Hypothetical protein F59E11.11 [Caenorhabditis elegans] ref|NP_505317.2| F59E11.11 [Caenorhabditis elegans] 0.0
blast AAG24144 Hypothetical protein F59E11.8 [Caenorhabditis elegans] ref|NP_505315.2| F59E11.8 [Caenorhabditis elegans] 1.0E-176
blast AAG24144 Hypothetical protein F59E11.8 [Caenorhabditis elegans] ref|NP_505315.2| F59E11.8 [Caenorhabditis elegans] 1.0E-157
blast AAC69041 Hypothetical protein T19A5.5 [Caenorhabditis elegans] ref|NP_505314.1| T19A5.5 [Caenorhabditis elegans] 2.0E-96
blast AAG24148 Hypothetical protein F59E11.10 [Caenorhabditis elegans] ref|NP_505316.1| F59E11.10 [Caenorhabditis elegans] 1.0E-91
blast AAG24144 Hypothetical protein F59E11.8 [Caenorhabditis elegans] ref|NP_505315.2| F59E11.8 [Caenorhabditis elegans] 5.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.1E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.9E-12
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:190147_AT
gccagtacttggctgacttatcttgatcaatttcaaagtttggaatttgatgaaaagata
actataacaagatgtatgtggttattattcagaagaatagaacgatgtgcaatgacagcc
gaattacggagaacaaaaatgtgtaagaagaatgaatatcttataaaaaccgatacagtt
gtgaatactgacagcgtcaaatgggacttcaattggctttcacatttttctccggatcaa
ctgagaacttttgttggaaatacatctgcaatactttgtgaaagtgtaacagaatgtatg
atggaagtacagccaacagatgaagaactttgctatattctttgtgtactatgcttctac
catattggcaataaaattggaggatcaatgcagaagacaacggagaggttattgaatatt
ctagccgataatctacatgagtattatgttgaacaaaaagatgcaactagatactcctac
cgactgacaaaaatattaaaaatcagtcaacagtacaaaaccctcatggaagaaaaacga
aggacggaagttcttggggacgttttcggagcgtttcgcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGTACTTGGCTGACTTATCTTG 121 281 529 Antisense
ACTGACAGCGTCAAATGGGACTTCA 135 97 715 Antisense
TGGGACTTCAATTGGCTTTCACATT 699 553 730 Antisense
TTCACATTTTTCTCCGGATCAACTG 369 687 747 Antisense
ACTTTGCTATATTCTTTGTGTACTA 447 101 855 Antisense
GTACTATGCTTCTACCATATTGGCA 75 461 874 Antisense
GAATATTCTAGCCGATAATCTACAT 74 327 942 Antisense
GATGCAACTAGATACTCCTACCGAC 181 413 988 Antisense
GATACTCCTACCGACTGACAAAAAT 646 423 998 Antisense
GTCAACAGTACAAAACCCTCATGGA 130 465 1034 Antisense
GACGTTTTCGGAGCGTTTCGCGTCA 672 375 1087 Antisense
Sequence Source Affymetrix Proprietary Database