[Home] | [Total List]

[190143_s_at]

Description F52A8.6 /REP_DB=WormBase Gene ID /WP=CE20840 /CHR=1 /FEA=Sanger Annotation /DEF=ras-like protein like (HINXTON) TR:Q19143 protein_id:CAA96623.1
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 72      6grp_total > 89      4grp_total > 47      6grp_highest_sub > Da      6grp_high1_sub > In      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 345
1 2 3 4 range
A 538.9
(3)
P 		296.4
(-3)
P 		317.9
(-2.5)
P 		331.1
(-2.1)
P 		243
B 456.5
(3)
P 		250.6
(-3)
P 		282.9
(-2.1)
P 		311.8
(-1.2)
P 		206
C 558
(3)
P 		213.4
(-3)
P 		304.9
(-1.4)
P 		269.4
(-2)
P 		345
avr 517.8
(3) 		253.5
(-3) 		301.9
(-1.9) 		304.1
(-1.9) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 344.6
(-1.8)
P 		430.8
(1.9)
P 		317.2
(-3)
P 		409.4
(0.9)
P 		393.1
(0.2)
P 		457.5
(3)
P 		140
B 327.5
(-3)
P 		402.7
(-1)
P 		358.4
(-2.2)
P 		341.2
(-2.6)
P 		537
(2.5)
P 		556.1
(3)
P 		229
C 386.7
(-2.5)
P 		431.5
(-0.4)
P 		375.6
(-3)
P 		384.9
(-2.6)
P 		420.4
(-0.9)
P 		504.5
(3)
P 		129
avr 352.9
(-2.9) 		421.7
(-0.3) 		350.4
(-3) 		378.5
(-1.9) 		450.2
(0.8) 		506
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 196.2
(3)
P 		64.3
(-2.4)
P 		83.1
(-1.6)
P 		48.5
(-3)
P 		148
B 145.6
(3)
P 		61.9
(-3)
P 		65.5
(-2.7)
P 		66.4
(-2.7)
P 		84
C 184.7
(3)
P 		61.4
(-2.3)
P 		106.3
(-0.4)
P 		45.4
(-3)
P 		139
avr 175.5
(3) 		62.5
(-2.6) 		85
(-1.4) 		53.4
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 63.5
(-3)
P 		153.2
(3)
P 		69.1
(-2.6)
P 		103.8
(-0.3)
P 		118.6
(0.7)
P 		111.4
(0.2)
P 		90
B 114
(-1.8)
P 		134.1
(-0.8)
P 		87
(-3)
P 		90.4
(-2.8)
P 		218.2
(3)
P 		207.4
(2.5)
P 		131
C 143.3
(1.3)
P 		131.7
(0.6)
P 		95.6
(-1.8)
P 		77.4
(-3)
P 		136
(0.8)
P 		168.9
(3)
P 		92
avr 106.9
(-1.2) 		139.7
(1.3) 		83.9
(-3) 		90.5
(-2.5) 		157.6
(2.6) 		162.6
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190143_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1928
Sequence Type Exemplar sequence
Representative Public ID F52A8.6 NCBI
Target Description F52A8.6 /REP_DB=WormBase Gene ID /WP=CE20840 /CHR=1 /FEA=Sanger Annotation /DEF=ras-like protein like (HINXTON) TR:Q19143 protein_id:CAA96623.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059675 NCBI Caenorhabditis elegans F52A8.6a (F52A8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000034791 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7356994:7358182:1 11/11 None
SNAP00000034780 ENSEMBL cdna:SNAP chromosome:CEL140:I:7357027:7358182:1 11/11 None
F52A8.6a ENSEMBL cdna:known chromosome:CEL140:I:7355494:7358472:1 gene:F52A8.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059676 2/11 Cross Hyb Matching Probes None
F52A8.6b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172487 2 1 NM_059675 173011_at (11), 190143_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7355424-7358113(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52A8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96623 Hypothetical protein F52A8.6a [Caenorhabditis elegans] emb|CAA95826.1| Hypothetical protein F52A8.6a [Caenorhabditis elegans] ref|NP_492076.1| F52A8.6a [Caenorhabditis elegans] 0.0
blast CAA96623 Hypothetical protein F52A8.6a [Caenorhabditis elegans] emb|CAA95826.1| Hypothetical protein F52A8.6a [Caenorhabditis elegans] ref|NP_492076.1| F52A8.6a [Caenorhabditis elegans] 1.0E-120
blast CAE66593 Hypothetical protein CBG11917 [Caenorhabditis briggsae] 2.0E-40
blast CAE66594 Hypothetical protein CBG11918 [Caenorhabditis briggsae] 1.0E-24
blast CAE66594 Hypothetical protein CBG11918 [Caenorhabditis briggsae] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:190143_S_AT
gaagccggcgaatggggagagcaatgcgggtggttgtagttggaggaaaaaaagtcggaa
agacagctattctgcggcaagtcgcatgtgttgaggatgttacgaataagccatatgaac
caacgatcgaagacacatatcaagttcttttggaagaaccggacaaagctcgagagattc
ttatattgcacgatacggcaggagtttcaaattacggaccgattgaactgaagaaggcat
atgtacaagctgcagacgcatttgttcttgtgtattcatctgctgattacgaatcgttta
acagagttgatttgctgaaaaaatggatagacagacaatttggaaaagataagaaagaag
ttccaatcgtagtccttgccaatatgcgagatcgaccggcgacagttgacagtgcttttg
cacatagttgggctgcacgagaaaaagttaaactattcgaggttactgcaaaggaccggc
agagcctagtcgatttcattcattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGGCGAATGGGGAGAGCAAT 67 345 497 Antisense
AGACAGCTATTCTGCGGCAAGTCGC 16 71 557 Antisense
GGCAGGAGTTTCAAATTACGGACCG 186 535 693 Antisense
AGCTGCAGACGCATTTGTTCTTGTG 269 81 744 Antisense
TGTTCTTGTGTATTCATCTGCTGAT 158 563 759 Antisense
AGAAGTTCCAATCGTAGTCCTTGCC 14 73 852 Antisense
AGTCCTTGCCAATATGCGAGATCGA 254 61 867 Antisense
GATCGACCGGCGACAGTTGACAGTG 508 417 886 Antisense
GTGCTTTTGCACATAGTTGGGCTGC 119 479 908 Antisense
GCAAAGGACCGGCAGAGCCTAGTCG 35 319 964 Antisense
GAGCCTAGTCGATTTCATTCATTAT 553 383 978 Antisense
Sequence Source Affymetrix Proprietary Database