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[190139_s_at] C-type lectin domain

Description E03H4.10 /REP_DB=WormBase Gene ID /WP=CE20647 /TR=O17741 /GB=CAB04034.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 13      6grp_total > 32      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3421
1 2 3 4 range
A 3517.6
(3)
P 		3347.5
(2.7)
P 		2264.5
(0.7)
P 		281.3
(-3)
P 		3236
B 3593
(3)
P 		2800.9
(1.6)
P 		2210.4
(0.6)
P 		189.9
(-3)
P 		3403
C 3550.5
(3)
P 		2866.3
(1.8)
P 		2006
(0.3)
P 		171.6
(-3)
P 		3379
avr 3553.7
(3) 		3004.9
(2) 		2160.3
(0.5) 		214.3
(-3) 		3339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3043
1 2 3 4 5 6 range
A 3597.3
(2.5)
P 		3866.1
(3)
P 		3332.1
(1.9)
P 		3344.1
(1.9)
P 		1579.7
(-1.6)
P 		913.4
(-3)
P 		2953
B 3396.9
(3)
P 		3334.4
(2.9)
P 		3340.7
(2.9)
P 		2757.3
(1.5)
P 		1569.9
(-1.3)
P 		822.9
(-3)
P 		2574
C 3318
(2.7)
P 		3174.3
(2.3)
P 		3468.1
(3)
P 		3390.1
(2.8)
P 		1769.9
(-0.9)
P 		877.5
(-3)
P 		2591
avr 3437.4
(3) 		3458.3
(3) 		3380.3
(2.8) 		3163.8
(2.3) 		1639.8
(-1.2) 		871.3
(-3) 		2587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1252
1 2 3 4 range
A 1280.8
(3)
P 		726.6
(0.3)
P 		592
(-0.3)
P 		41.2
(-3)
P 		1240
B 1145.8
(3)
P 		691.8
(0.5)
P 		512.2
(-0.4)
P 		40.5
(-3)
P 		1105
C 1175.3
(3)
P 		824.1
(1.2)
P 		699.1
(0.5)
P 		28.9
(-3)
P 		1146
avr 1200.6
(3) 		747.5
(0.7) 		601.1
(-0.1) 		36.9
(-3) 		1164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1153
1 2 3 4 5 6 range
A 663.1
(-0.7)
P 		1375
(3)
P 		725.7
(-0.4)
P 		848.1
(0.3)
P 		476.7
(-1.7)
P 		222.4
(-3)
P 		1153
B 1182
(3)
P 		1109.9
(2.5)
P 		811.2
(0.5)
P 		730.3
(-0.1)
P 		637.8
(-0.7)
P 		306.8
(-3)
P 		875
C 1229.9
(3)
P 		968.6
(1.3)
P 		882.7
(0.8)
P 		681.8
(-0.5)
P 		572.7
(-1.2)
P 		293.8
(-3)
P 		936
avr 1025
(2.1) 		1151.2
(3) 		806.5
(0.6) 		753.4
(0.3) 		562.4
(-1) 		274.3
(-3) 		877
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190139_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1743
Sequence Type Exemplar sequence
Representative Public ID E03H4.10 NCBI
Target Description E03H4.10 /REP_DB=WormBase Gene ID /WP=CE20647 /TR=O17741 /GB=CAB04034.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060751 NCBI Caenorhabditis elegans C-type LECtin family member (clec-17) (clec-17) mRNA, complete cds. 11/11 None
SNAP00000031044 ENSEMBL cdna:SNAP chromosome:CEL140:I:12438179:12439573:-1 11/11 None
GENEFINDER00000031056 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12438179:12439573:-1 11/11 None
E03H4.10 ENSEMBL cdna:known chromosome:CEL140:I:12438162:12439595:-1 gene:E03H4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12438109-12439504(-) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin domain
Gene Symbol clec-17
Ensembl E03H4.10
Entrez Gene 173111 Entrez gene
SwissProt O17741 EMBL-EBI
WormBase CE20647 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04034 Hypothetical protein E03H4.10 [Caenorhabditis elegans] ref|NP_493152.1| C-type LECtin family member (clec-17) [Caenorhabditis elegans] 0.0
blast CAB04882 Hypothetical protein T27F6.2 [Caenorhabditis elegans] ref|NP_493166.1| C-type LECtin family member (clec-12) [Caenorhabditis elegans] 1.0E-141
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-5
Pfam IPR001304 EMBL-EBI C-type lectin 2.0E-11
Pfam IPR000859 EMBL-EBI CUB 5.0E-27
Pfam IPR001304 EMBL-EBI C-type lectin 2.0E-11
Pfam IPR000859 EMBL-EBI CUB 5.0E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493152.1 1 7-29
E03H4.10 1 7-29
SNAP00000031044 1 7-29
GENEFINDER00000031056 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:190139_S_AT
gcaatgtcaacggtcatttcgtcccctattccgtctggtttctggttcagtacaaattgt
actcgtcctgccaaatatatttgcaagcgcccagctggcgtgcagtctacaactgcatca
ccagtaactgtggccccaagccctgcaaacccatcaaactgcaacgcaggcctactaatg
tctccaggagtcatcacctctccaaactatcccgagaactatttcaacaacgaaaactgc
acttatcagctgtccacattgggagcgtataagattgctctacgatttgcgtcattctcc
acggaagcaaatgatgttgtaacagtgtatgatggcctgacaacggatagtccctgtctg
cgccgatgcagtggaactcagagaccctttgcactgacttcgagtggaaataccatgctg
gtaacgttcacgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATGTCAACGGTCATTTCGTCCC 488 321 766 Antisense
TATTCCGTCTGGTTTCTGGTTCAGT 104 663 792 Antisense
AAATTGTACTCGTCCTGCCAAATAT 357 115 819 Antisense
ACTGCAACGCAGGCCTACTAATGTC 560 97 923 Antisense
AATGTCTCCAGGAGTCATCACCTCT 22 165 942 Antisense
GAAAACTGCACTTATCAGCTGTCCA 304 355 997 Antisense
TGCTCTACGATTTGCGTCATTCTCC 372 581 1041 Antisense
GATGGCCTGACAACGGATAGTCCCT 522 405 1096 Antisense
CCCTGTCTGCGCCGATGCAGTGGAA 170 261 1117 Antisense
GTGGAACTCAGAGACCCTTTGCACT 435 491 1136 Antisense
TACCATGCTGGTAACGTTCACGTCA 184 649 1176 Antisense
Sequence Source Affymetrix Proprietary Database