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[190136_at] zinc finger protein

Description K11D12.9 /REP_DB=WormBase Gene ID /WP=CE12142 /TR=O44624 /GB=AAB94229.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 60      6grp_total > 07      4grp_total > 03      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2107
1 2 3 4 range
A 396.3
(-2.6)
P 		299.5
(-2.9)
P 		273
(-3)
P 		2073.7
(3)
P 		1801
B 509.2
(-1.9)
P 		259
(-2.7)
P 		185.4
(-3)
P 		1932.9
(3)
P 		1748
C 444.3
(-2.5)
P 		263.7
(-3)
P 		260
(-3)
P 		2292.3
(3)
P 		2032
avr 449.9
(-2.3) 		274.1
(-2.9) 		239.5
(-3) 		2099.6
(3) 		1860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 676.6
(3)
P 		433.4
(-0.4)
P 		429.4
(-0.4)
P 		307.3
(-2.1)
P 		245
(-3)
P 		248.8
(-2.9)
P 		432
B 564
(3)
P 		419.6
(0.2)
P 		449.1
(0.8)
P 		348
(-1.2)
P 		291.2
(-2.3)
P 		256.7
(-3)
P 		307
C 387
(1.6)
P 		418.1
(3)
P 		280.8
(-3)
P 		312.7
(-1.6)
P 		280
(-3)
P 		358.8
(0.4)
P 		138
avr 542.5
(3) 		423.7
(0.4) 		386.4
(-0.5) 		322.7
(-1.9) 		272.1
(-3) 		288.1
(-2.6) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 144.3
(-1)
P 		65
(-3)
P 		71.4
(-2.8)
P 		303.6
(3)
P 		239
B 162.4
(-1.1)
P 		64
(-2.7)
P 		43
(-3)
P 		411.9
(3)
P 		369
C 147.1
(-1.6)
P 		75.8
(-3)
P 		90.6
(-2.7)
P 		386.5
(3)
P 		311
avr 151.3
(-1.3) 		68.3
(-3) 		68.3
(-3) 		367.3
(3) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 124.7
(1.1)
P 		154.1
(3)
P 		93.5
(-0.9)
P 		77.9
(-1.9)
P 		73.9
(-2.1)
P 		60.6
(-3)
P 		94
B 196.3
(3)
P 		139.7
(-0.3)
P 		109
(-2)
P 		92.2
(-3)
P 		118.3
(-1.5)
P 		95.7
(-2.8)
P 		104
C 143.5
(3)
P 		127.6
(1.8)
P 		71.5
(-2.4)
P 		62.9
(-3)
P 		90.6
(-0.9)
P 		120.1
(1.3)
P 		81
avr 154.8
(3) 		140.5
(1.9) 		91.3
(-1.9) 		77.7
(-3) 		94.3
(-1.7) 		92.1
(-1.9) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15615
Sequence Type Exemplar sequence
Representative Public ID K11D12.9 NCBI
Target Description K11D12.9 /REP_DB=WormBase Gene ID /WP=CE12142 /TR=O44624 /GB=AAB94229.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071953 NCBI Caenorhabditis elegans K11D12.9 (K11D12.9) mRNA, complete cds. 11/11 None
SNAP00000023428 ENSEMBL cdna:SNAP chromosome:CEL140:V:5042245:5045981:-1 11/11 None
GENEFINDER00000023439 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5042245:5045710:-1 11/11 None
K11D12.9 ENSEMBL cdna:known chromosome:CEL140:V:5042245:5046016:-1 gene:K11D12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5042244-5044527(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl K11D12.9
Entrez Gene 178892 Entrez gene
SwissProt O44624 EMBL-EBI
WormBase CE29517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504354 K11D12.9 [Caenorhabditis elegans] gb|AAB94229.2| Hypothetical protein K11D12.9 [Caenorhabditis elegans] 0.0
blast CAE64057 Hypothetical protein CBG08656 [Caenorhabditis briggsae] 1.0E-177
blast CAE64057 Hypothetical protein CBG08656 [Caenorhabditis briggsae] 1.0E-162
blast NP_504354 K11D12.9 [Caenorhabditis elegans] gb|AAB94229.2| Hypothetical protein K11D12.9 [Caenorhabditis elegans] 1.0E-154
blast CAE64057 Hypothetical protein CBG08656 [Caenorhabditis briggsae] 1.0E-136
blast XP_647022 Kelch repeat-containing protein [Dictyostelium discoideum] gb|EAL73019.1| RING Zn finger-containing protein [Dictyostelium discoideum] 7.0E-11
blast XP_647022 Kelch repeat-containing protein [Dictyostelium discoideum] gb|EAL73019.1| RING Zn finger-containing protein [Dictyostelium discoideum] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:190136_AT
actgacaatccaaaactaccgccaacaacaagaaattcacgaccaaaaagagctgtctga
gcatcgtaaaaaaatttattctgaagagaaagcacgaaaagacgaggagattttgaacct
tcaaaagcagaagaccgacgtcgagatggagctggaacggaagagtaacctgttggatga
acagactaatgttacaaaacgaatggaggagaaaagttatcaattgaagccattggtgct
gctcgatgaattaacaaagaaacacagtcaacttgtcgacctttcaactgaatttttgcc
aaacatcaatgctgtcaaaatgctctacaaagaattgtttgagagtttcccacaactaga
gaccaatgttcacgaatcaaaactctcaatggaacgtcgtgtcgaggaagtcgaagagca
acttcgatcacgtaatcgcgattttcaacgtcttcaggagaagctggtagccgagtgttg
catatgtttggcaacaaaaccatcaattgttttcatgccgtgtcgtcatctgatcacatg
ttccggctgctacgatgcaagcgattttcgagagtgtccaacgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGACAATCCAAAACTACCGCCAA 455 97 339 Antisense
AGACCGACGTCGAGATGGAGCTGGA 427 67 470 Antisense
TTGAAGCCATTGGTGCTGCTCGATG 433 703 562 Antisense
AACACAGTCAACTTGTCGACCTTTC 592 135 599 Antisense
AACTCTCAATGGAACGTCGTGTCGA 143 141 719 Antisense
CGTAATCGCGATTTTCAACGTCTTC 346 247 769 Antisense
GAAGCTGGTAGCCGAGTGTTGCATA 235 343 798 Antisense
ATCAATTGTTTTCATGCCGTGTCGT 131 27 840 Antisense
GTGTCGTCATCTGATCACATGTTCC 581 487 858 Antisense
TTCCGGCTGCTACGATGCAAGCGAT 342 697 879 Antisense
GATTTTCGAGAGTGTCCAACGTGCA 189 429 901 Antisense
Sequence Source Affymetrix Proprietary Database