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[190135_at] zinc finger protein

Description F07C3.10 /REP_DB=WormBase Gene ID /WP=CE07031 /TR=Q19155 /GB=AAG24032.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 10      6grp_total > 35      4grp_total > 14      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 941
1 2 3 4 range
A 774.7
(3)
P 		97.2
(-3)
A 		101.8
(-3)
P 		454
(0.2)
P 		678
B 504.8
(-0.2)
P 		181.1
(-2.2)
P 		58.8
(-3)
P 		999.3
(3)
P 		941
C 541.2
(2.2)
P 		115.1
(-3)
P 		167.8
(-2.4)
P 		606.3
(3)
P 		491
avr 606.9
(2.2) 		131.1
(-2.8) 		109.5
(-3) 		686.5
(3) 		577

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 340.3
(2.8)
P 		295.5
(1.4)
M 		348.2
(3)
P 		200.3
(-1.6)
P 		227.1
(-0.8)
P 		155.3
(-3)
P 		193
B 474.3
(3)
P 		397.5
(1.3)
P 		449.3
(2.4)
P 		246.4
(-2.2)
P 		210.3
(-3)
P 		325.5
(-0.4)
P 		264
C 262.1
(-0.1)
P 		363.5
(2.3)
P 		188.1
(-1.9)
A 		277.3
(0.3)
P 		140.3
(-3)
P 		392.9
(3)
P 		253
avr 358.9
(3) 		352.2
(2.8) 		328.5
(1.9) 		241.3
(-1.2) 		192.6
(-3) 		291.2
(0.6) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 282.1
(3)
P 		21.1
(-3)
A 		26.6
(-2.9)
P 		66.5
(-2)
P 		261
B 161
(1.4)
P 		44.7
(-2.1)
P 		13.6
(-3)
P 		212.9
(3)
P 		199
C 179.2
(3)
P 		33.1
(-3)
P 		58.5
(-2)
P 		102.2
(-0.2)
P 		146
avr 207.4
(3) 		33
(-3) 		32.9
(-3) 		127.2
(0.2) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 62.7
(-0.8)
P 		105.1
(3)
M 		75.8
(0.4)
P 		50.8
(-1.8)
P 		68.5
(-0.3)
P 		37.8
(-3)
P 		67
B 165
(3)
P 		132.3
(1)
P 		109.1
(-0.4)
P 		65.3
(-3)
P 		85.5
(-1.8)
P 		121.4
(0.4)
P 		100
C 97.2
(0.6)
P 		110.9
(1.6)
P 		47.9
(-2.8)
A 		55.8
(-2.3)
P 		45.4
(-3)
P 		131.5
(3)
P 		86
avr 108.3
(2.2) 		116.1
(3) 		77.6
(-0.9) 		57.3
(-3) 		66.5
(-2.1) 		96.9
(1) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11416
Sequence Type Exemplar sequence
Representative Public ID F07C3.10 NCBI
Target Description F07C3.10 /REP_DB=WormBase Gene ID /WP=CE07031 /TR=Q19155 /GB=AAG24032.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072997 NCBI Caenorhabditis elegans F07C3.10 (F07C3.10) mRNA, complete cds. 11/11 None
F07C3.10 ENSEMBL cdna:known chromosome:CEL140:V:9259449:9263709:-1 gene:F07C3.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013409 4/11 Cross Hyb Matching Probes None
GENEFINDER00000013410 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9259448-9263709(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-36
Ensembl F07C3.10
Entrez Gene 184128 Entrez gene
SwissProt Q19155 EMBL-EBI
WormBase CE07031 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505398 F07C3.10 [Caenorhabditis elegans] gb|AAG24032.1| Hypothetical protein F07C3.10 [Caenorhabditis elegans] 0.0
blast CAE72144 Hypothetical protein CBG19242 [Caenorhabditis briggsae] 0.0
blast CAB09422 Hypothetical protein F57A10.5 [Caenorhabditis elegans] ref|NP_506930.1| Nuclear Hormone Receptor family member (nhr-60) [Caenorhabditis elegans] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.1E-48
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 7.9E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505398.1 3 433-455,475-497,518-540
F07C3.10 3 433-455,475-497,518-540
Sequence
Target Sequence 
>C. ELEGANS:190135_AT
gctgctcagaatatcttgactcgtgaacgacataactttaccggagcacttttattgtat
tgtctcagtcgccatggttcacatgcaggacctgccagatattacagtattattaatatg
atagacgttcttgaacattatcaaagagattttcgagatttcatgcttcttttagatatt
agtctcccaacaagattcgctaaacaccgtaaatttttgcaacgagaaattttgaacata
aatgtggtatgtatggtagcaatttccataattttgtgtccaatattttatttaccaatg
tatggatatcaatctaatggactttttcgttttgtggattggaatttggcacttcctgca
atttttaccgtttattgtattttaggagttgttatatctgttatggatttatttcactat
cgattaaaggctatattgacgatgaacacaaaacctcggaatttaaaaattaagcgtttt
gttcaacaactgatttatcttgcatatactgttcttgttttcactgctgtatcatatctt
ggactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTCAGAATATCTTGACTCGTG 529 297 1078 Antisense
GACATAACTTTACCGGAGCACTTTT 628 365 1106 Antisense
TTATTGTATTGTCTCAGTCGCCATG 56 679 1129 Antisense
GTCGCCATGGTTCACATGCAGGACC 388 475 1145 Antisense
ATGCAGGACCTGCCAGATATTACAG 150 43 1160 Antisense
GATTTTCGAGATTTCATGCTTCTTT 510 429 1225 Antisense
ATTAGTCTCCCAACAAGATTCGCTA 188 13 1255 Antisense
ATGGACTTTTTCGTTTTGTGGATTG 2 53 1394 Antisense
TGGCACTTCCTGCAATTTTTACCGT 708 545 1424 Antisense
ATACTGTTCTTGTTTTCACTGCTGT 83 25 1583 Antisense
CACTGCTGTATCATATCTTGGACTT 270 199 1599 Antisense
Sequence Source Affymetrix Proprietary Database