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[190133_at] deoxyribonuclease

Description F25H2.10 /REP_DB=WormBase Gene ID /WP=CE09655 /TR=SW:Q93572 /GB=CAB02098.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=deoxyribonuclease
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 17      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18140
1 2 3 4 range
A 28205.4
(-3)
P 		35766.4
(0.4)
P 		35504.1
(0.3)
P 		41359.9
(3)
P 		13155
B 25751.2
(-3)
P 		32408.3
(0.2)
P 		31643.8
(-0.2)
P 		38320.9
(3)
P 		12570
C 26664.4
(-3)
P 		29105.2
(-2.1)
P 		27364.8
(-2.8)
P 		43890.7
(3)
P 		17226
avr 26873.7
(-3) 		32426.6
(-0.7) 		31504.2
(-1.1) 		41190.5
(3) 		14317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9621
1 2 3 4 5 6 range
A 27814.6
(2.4)
P 		24826.9
(-1.6)
P 		28284.4
(3)
P 		27270.8
(1.7)
P 		23752.1
(-3)
P 		26912
(1.2)
P 		4532
B 25778.7
(2)
P 		25537.3
(1.8)
P 		26012.3
(2.2)
P 		26810.4
(3)
P 		23235.4
(-0.4)
P 		20590.1
(-3)
P 		6220
C 23487.7
(-0.6)
P 		27726.1
(2.1)
P 		29232.3
(3)
P 		27139
(1.7)
P 		25344.3
(0.6)
P 		19611.6
(-3)
P 		9621
avr 25693.7
(0.6) 		26030.1
(1) 		27843
(3) 		27073.4
(2.2) 		24110.6
(-1.1) 		22371.2
(-3) 		5472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4215
1 2 3 4 range
A 10269.6
(3)
P 		7763.9
(-0.6)
P 		9281.5
(1.6)
P 		6054.3
(-3)
P 		4215
B 8211.8
(3)
P 		8004.1
(1.6)
P 		7332.6
(-3)
P 		8166.2
(2.7)
P 		879
C 8826.7
(1)
P 		8367.9
(-0.3)
P 		9537.5
(3)
P 		7400.7
(-3)
P 		2137
avr 9102.7
(3) 		8045.3
(-0.3) 		8717.2
(1.8) 		7207.1
(-3) 		1896

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4313
1 2 3 4 5 6 range
A 5127.4
(-3)
P 		8829.7
(3)
P 		6159.7
(-1.3)
P 		6916.5
(-0.1)
P 		7167.3
(0.3)
P 		6552.2
(-0.7)
P 		3702
B 8969.7
(2.1)
P 		8500.3
(1.2)
P 		6316.6
(-3)
P 		7101.2
(-1.5)
P 		9440.3
(3)
P 		7678
(-0.4)
P 		3124
C 8705.9
(3)
P 		8460.1
(2.5)
P 		7440.1
(0.7)
P 		5457.7
(-3)
P 		8201.1
(2.1)
P 		6565.1
(-1)
P 		3248
avr 7601
(0.2) 		8596.7
(3) 		6638.8
(-2.6) 		6491.8
(-3) 		8269.6
(2.1) 		6931.8
(-1.7) 		2105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1035
Sequence Type Exemplar sequence
Representative Public ID F25H2.10 NCBI
Target Description F25H2.10 /REP_DB=WormBase Gene ID /WP=CE09655 /TR=SW:Q93572 /GB=CAB02098.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=deoxyribonuclease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060365 NCBI Caenorhabditis elegans F25H2.10 (deoxyribonuclease) mRNA, complete cds. 11/11 None
SNAP00000042623 ENSEMBL cdna:SNAP chromosome:CEL140:I:10576055:10577084:1 11/11 None
GENEFINDER00000042636 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10576055:10577084:1 11/11 None
F25H2.10.2 ENSEMBL cdna:known chromosome:CEL140:I:10576010:10577136:1 gene:F25H2.10 11/11 None
F25H2.10.1 ENSEMBL cdna:known chromosome:CEL140:I:10576015:10577136:1 gene:F25H2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10575985-10577015(+) 95.21 100.0
Public Domain and Genome References
Gene Title deoxyribonuclease
Gene Symbol rpa-0
Ensembl F25H2.10
Entrez Gene 172943 Entrez gene
SwissProt Q93572 EMBL-EBI
WormBase CE09655 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17855_AT 60S acidic ribosomal protein P0 (RPP0A) at
ATH1-121501:267349_AT 60S acidic ribosomal protein P0 (RPP0A) at
DROSOPHILA_2:1637546_AT Ribosomal protein LP0 dm
DROSGENOME1:143074_AT Ribosomal protein LP0 dm
HG-U95AV2:31538_AT ribosomal protein, large, P0 hs
HG-U133_PLUS_2:211720_X_AT ribosomal protein, large, P0 hs
HG-U133A:211720_X_AT ribosomal protein, large, P0 hs
HG-U133A_2:211720_X_AT ribosomal protein, large, P0 hs
HG-U133_PLUS_2:201033_X_AT ribosomal protein, large, P0 hs
HG-U133A:201033_X_AT ribosomal protein, large, P0 hs
HG-U133A_2:201033_X_AT ribosomal protein, large, P0 hs
HG-U133A:208856_X_AT ribosomal protein, large, P0 hs
HG-U133_PLUS_2:208856_X_AT ribosomal protein, large, P0 hs
HG-U133A_2:208856_X_AT ribosomal protein, large, P0 hs
HG-U133_PLUS_2:214167_S_AT ribosomal protein, large, P0 hs
HG-U133A_2:214167_S_AT ribosomal protein, large, P0 hs
HG-FOCUS:214167_S_AT ribosomal protein, large, P0 hs
HG-U133A:214167_S_AT ribosomal protein, large, P0 hs
HU35KSUBC:RC_D51125_F_AT ribosomal protein, large, P0 hs
HUGENEFL:M17885_AT ribosomal protein, large, P0 hs
U133_X3P:G12653774_3P_S_AT ribosomal protein, large, P0 hs
U133_X3P:HS.73742.3.A1_3P_S_AT ribosomal protein, large, P0 hs
HG-U133A_2:211972_X_AT ribosomal protein, large, P0 hs
HG-U133_PLUS_2:211972_X_AT ribosomal protein, large, P0 hs
HG-U133A:211972_X_AT ribosomal protein, large, P0 hs
HG-U95C:57261_F_AT ribosomal protein, large, P0 hs
HG-U95C:58791_F_AT ribosomal protein, large, P0 hs
HU35KSUBC:RC_AA084683_AT Ribosomal protein, large, P0 hs
MU11KSUBA:C76057_RC_F_AT acidic ribosomal phosphoprotein P0 mm
MU11KSUBB:X15267_F_AT acidic ribosomal phosphoprotein P0 mm
MU11KSUBB:MSA.2162.0_F_AT acidic ribosomal phosphoprotein P0 mm
MG-U74AV2:101213_AT acidic ribosomal phosphoprotein P0 mm
MG-U74CV2:166005_F_AT acidic ribosomal phosphoprotein P0 mm
MOE430A:1419441_AT acidic ribosomal phosphoprotein P0 mm
MOUSE430A_2:1419441_AT acidic ribosomal phosphoprotein P0 mm
MOUSE430_2:1419441_AT acidic ribosomal phosphoprotein P0 mm
MU19KSUBA:TC23154_AT Acidic ribosomal phosphoprotein P0 (Arbp), mRNA mm
MU19KSUBA:TC23156_AT Acidic ribosomal phosphoprotein P0 (Arbp), mRNA mm
MU19KSUBA:TC23159_F_AT Acidic ribosomal phosphoprotein P0, mRNA (cDNA clone MGC:18649 IMAGE:3982438) mm
MU19KSUBA:TC23160_AT Acidic ribosomal phosphoprotein P0, mRNA (cDNA clone MGC:18649 IMAGE:3982438) mm
MU19KSUBA:TC23160_G_AT Acidic ribosomal phosphoprotein P0, mRNA (cDNA clone MGC:18649 IMAGE:3982438) mm
MU19KSUBB:TC31013_AT Acidic ribosomal phosphoprotein P0 (Arbp), mRNA mm
MU19KSUBC:TC35870_F_AT Acidic ribosomal phosphoprotein P0 (Arbp), mRNA mm
MU19KSUBC:TC35871_AT Acidic ribosomal phosphoprotein P0 (Arbp), mRNA mm
MU19KSUBC:TC35872_AT Acidic ribosomal phosphoprotein P0, mRNA (cDNA clone MGC:18649 IMAGE:3982438) mm
RG-U34A:X15096CDS_S_AT acidic ribosomal phosphoprotein P0 rn
RAE230A:1367560_AT acidic ribosomal phosphoprotein P0 rn
RAT230_2:1367560_AT acidic ribosomal phosphoprotein P0 rn
YEAST_2:1778794_AT Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
6414 translational elongation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02098 Hypothetical protein F25H2.10 [Caenorhabditis elegans] ref|NP_492766.1| F25H2.10 [Caenorhabditis elegans] sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 1.0E-150
blast CAE58987 Hypothetical protein CBG02260 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR001790 EMBL-EBI Ribosomal protein L10 1.7E-51
Pfam IPR001813 EMBL-EBI Ribosomal protein 60S 6.6E-19
Sequence
Target Sequence 
>C. ELEGANS:190133_AT
gagccccagccaaggctggtgccatcgctccatgcgacgtcaagcttccaccacagaaca
ctggaatgggaccagaaaagacctctttcttccaggctcttcagatcccaaccaagatcg
ccagaggtaccatcgaaatcttgaacgacgtccatctcatcaaggaaggagataaggtcg
gagcttccgaatctgctcttctcaacatgttgggagttactccgttctcatatggattgg
tcgttcgccaagtttacgatgatggaaccctctacactccagaagttttggacatgacca
ccgaggagctccgcaagcgtttcctttctggagttcgcaatgtcgcttccgtctcgttgg
ccgtcaactacccaactctcgcttccgtcgcccactctttggccaacggacttcaaaaca
tgttgggagttgctgccgtcaccgatgtctccttcaaggaggccgagaccatcaaggcct
tcattgccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCCCAGCCAAGGCTGGTGCCAT 112 387 335 Antisense
AGAAAAGACCTCTTTCTTCCAGGCT 632 71 408 Antisense
GAACGACGTCCATCTCATCAAGGAA 646 345 477 Antisense
AGGTCGGAGCTTCCGAATCTGCTCT 448 57 509 Antisense
ATCTGCTCTTCTCAACATGTTGGGA 678 33 525 Antisense
GGAGTTACTCCGTTCTCATATGGAT 9 517 547 Antisense
GGATTGGTCGTTCGCCAAGTTTACG 650 507 568 Antisense
TACGATGATGGAACCCTCTACACTC 583 647 589 Antisense
TTGGACATGACCACCGAGGAGCTCC 149 709 622 Antisense
GTCACCGATGTCTCCTTCAAGGAGG 324 463 772 Antisense
GACCATCAAGGCCTTCATTGCCGAC 347 383 801 Antisense
Sequence Source Affymetrix Proprietary Database