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[190132_at] sulphate transporter

Description K12G11.2 /REP_DB=WormBase Gene ID /WP=CE12210 /TR=O17951 /GB=CAB04607.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sulphate transporter
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_high_8_8 > 04      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 968
1 2 3 4 range
A 292.8
(1)
P 		36.7
(-3)
A 		72.8
(-2.4)
P 		421.1
(3)
P 		384
B 226.3
(-1.7)
P 		79.6
(-2.8)
P 		59.1
(-3)
P 		861.6
(3)
P 		803
C 295.9
(-1.5)
P 		63.1
(-2.9)
P 		53.8
(-3)
P 		1004.8
(3)
P 		951
avr 271.7
(-1.2) 		59.8
(-3) 		61.9
(-3) 		762.5
(3) 		703

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 150
(-3)
P 		221.5
(-2.1)
P 		164.6
(-2.8)
P 		193.8
(-2.4)
P 		202.5
(-2.3)
P 		619.9
(3)
P 		470
B 147
(-2.2)
P 		209.6
(-0.8)
P 		321.7
(1.8)
P 		114.6
(-3)
P 		273.6
(0.7)
P 		371.9
(3)
P 		257
C 107.9
(-3)
P 		210.9
(-0.8)
P 		233.9
(-0.3)
P 		115.9
(-2.8)
P 		324.8
(1.6)
P 		392.5
(3)
P 		285
avr 135
(-3) 		214
(-1.5) 		240.1
(-1.1) 		141.4
(-2.9) 		267
(-0.6) 		461.4
(3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 106.6
(3)
P 		8
(-3)
A 		19
(-2.3)
P 		61.6
(0.3)
P 		99
B 72.2
(-0.9)
P 		19.7
(-2.8)
P 		13.7
(-3)
P 		183.6
(3)
P 		170
C 97.9
(0.2)
P 		18.1
(-3)
P 		18.8
(-3)
P 		169.4
(3)
P 		151
avr 92.2
(0.8) 		15.3
(-3) 		17.2
(-2.9) 		138.2
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 27.6
(-3)
P 		78.8
(-0.5)
P 		35.8
(-2.6)
P 		49.1
(-2)
P 		61.1
(-1.4)
P 		150.9
(3)
P 		123
B 51.1
(-1.9)
P 		69.8
(-0.8)
P 		78.1
(-0.4)
P 		30.4
(-3)
P 		111.2
(1.5)
P 		138.7
(3)
P 		108
C 40
(-2.1)
P 		64.4
(-0.7)
P 		59.5
(-1)
P 		23.3
(-3)
P 		105.1
(1.5)
P 		131.4
(3)
P 		108
avr 39.6
(-2.7) 		71
(-0.9) 		57.8
(-1.7) 		34.3
(-3) 		92.5
(0.3) 		140.3
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13369
Sequence Type Exemplar sequence
Representative Public ID K12G11.2 NCBI
Target Description K12G11.2 /REP_DB=WormBase Gene ID /WP=CE12210 /TR=O17951 /GB=CAB04607.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sulphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073589 NCBI Caenorhabditis elegans SULfate Permease family member (sulp-5) (sulp-5) mRNA, complete cds. 11/11 None
SNAP00000018965 ENSEMBL cdna:SNAP chromosome:CEL140:V:11882620:11885748:1 11/11 None
GENEFINDER00000018974 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11882620:11885557:1 11/11 None
K12G11.2 ENSEMBL cdna:known chromosome:CEL140:V:11882656:11885557:1 gene:K12G11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11882655-11885557(+) 100.0 100.0
Public Domain and Genome References
Gene Title sulphate transporter
Gene Symbol sulp-5
Ensembl K12G11.2
Entrez Gene 187335 Entrez gene
WormBase CE39106 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17509_S_AT sulfate transporter at
ATH1-121501:255105_AT sulfate transporter at
CANINE:1606090_AT similar to Solute carrier family 26, member 6 (Pendrin-like protein 1) (Pendrin L1) cfa
CANINE_2:CFAAFFX.19087.1.S1_S_AT similar to Solute carrier family 26, member 6 (Pendrin-like protein 1) (Pendrin L1) cfa
CHICKEN:GGA.2859.1.S1_AT solute carrier family 26, member 6 gga
CHICKEN:GGAAFFX.26597.1.S1_S_AT solute carrier family 26, member 6 gga
HG-U133_PLUS_2:221572_S_AT solute carrier family 26, member 6 hs
HG-FOCUS:221572_S_AT solute carrier family 26, member 6 hs
HG-U133A_2:221572_S_AT solute carrier family 26, member 6 hs
HG-U133A:221572_S_AT solute carrier family 26, member 6 hs
HU35KSUBA:RC_AA419217_AT solute carrier family 26, member 6 hs
U133_X3P:G13344998_3P_A_AT solute carrier family 26, member 6 hs
HG-U95B:54625_AT solute carrier family 26, member 6 hs
MG-U74BV2:107390_AT solute carrier family 26, member 6 mm
MOE430A:1416275_AT solute carrier family 26, member 6 mm
MOUSE430A_2:1416275_AT solute carrier family 26, member 6 mm
MOUSE430_2:1416275_AT solute carrier family 26, member 6 mm
RG-U34B:RC_AI058358_AT solute carrier family 26, member 6 (predicted) rn
RAE230B:1378290_AT solute carrier family 26, member 6 (predicted) rn
RAT230_2:1378290_AT solute carrier family 26, member 6 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_505990 SULfate Permease family member (sulp-5) [Caenorhabditis elegans] 0.0
blast AAX34423 anion transporter SULP-5 [Caenorhabditis elegans] 0.0
blast CAB04607 Hypothetical protein K12G11.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 7.6E-40
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 1.9E-39
Pfam IPR001902 EMBL-EBI Sulphate transporter 1.0E-126
Pfam IPR002645 EMBL-EBI Sulfate transporter/antisigma-factor antagonist STAS 7.6E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505990.1 10 56-78,93-112,119-136,181-203,299-318,354-373,386-408,423-440,442-464,484-506
K12G11.2 10 56-78,93-112,119-136,181-203,299-318,354-373,386-408,423-440,442-464,484-506
SNAP00000018965 8 97-114,119-141,161-183,277-296,332-351,364-386,420-442,463-485
GENEFINDER00000018974 10 68-90,105-124,131-148,193-215,311-330,366-385,398-420,435-452,454-476,496-518
Sequence
Target Sequence 
>C. ELEGANS:190132_AT
tgttgacgtttccgaaggactcttaattgcaattttcttcgcattatttacaacaatact
tagggagcaatatccaaaatggcatctgctcgcaaatgtgaaagatactgacgagtttag
tgacactcaacaatatcaggaaactatattctacaaaggaatttgcattttcaaattcga
tgctccattactttttcataatgttgaatgtttcaaaaaatgtatcgaaaaagtgtacga
tgaatggaaaaagtcttctgaatttaattttgtgaaggagccaaacgcaggcaagggaag
caagtttacatttgaaggaatgcataggattgctccaattactgaaataccacttcatcc
aggcatcaaccgtgacccaatacttcctcgtcattttgtaattgattgctccggatttac
atttatcgatttgatgggtgttagtgctctcaaagaagttttttctgatctcagaaaaaa
gagagtacaggtttactttgcaagcacaaaagtaccggtgcgagaaatgtttgaaaaatg
tagtttctttgattttgtatcgaaagaaaacttctatccaactctgagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGACGTTTCCGAAGGACTCTTA 198 561 1488 Antisense
GACTCTTAATTGCAATTTTCTTCGC 615 373 1505 Antisense
ATTTTCTTCGCATTATTTACAACAA 293 15 1519 Antisense
AATGGCATCTGCTCGCAAATGTGAA 182 163 1565 Antisense
ATTCGATGCTCCATTACTTTTTCAT 460 9 1662 Antisense
GCATAGGATTGCTCCAATTACTGAA 13 309 1809 Antisense
TGAAATACCACTTCATCCAGGCATC 217 573 1830 Antisense
TGCTCCGGATTTACATTTATCGATT 459 581 1894 Antisense
GATGGGTGTTAGTGCTCTCAAAGAA 14 409 1920 Antisense
GTACAGGTTTACTTTGCAAGCACAA 485 459 1972 Antisense
GAAAACTTCTATCCAACTCTGAGAG 436 355 2053 Antisense
Sequence Source Affymetrix Proprietary Database