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[190129_at] C2 domain

Description F07A5.5 /REP_DB=WormBase Gene ID /WP=CE05558 /GEN=sus-1 /TR=Q19136 /GB=CAA96615.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C2 domain
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 04      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1123
1 2 3 4 range
A 1195.9
(3)
P 		823.7
(0.2)
P 		390.7
(-3)
P 		1012.9
(1.6)
P 		805
B 1376.7
(3)
P 		620.1
(-2)
P 		467.9
(-3)
P 		1022.3
(0.7)
P 		909
C 1514.1
(3)
P 		629.5
(-2.1)
P 		481.5
(-3)
P 		948
(-0.3)
P 		1033
avr 1362.2
(3) 		691.1
(-1.4) 		446.7
(-3) 		994.4
(0.6) 		916

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 791
1 2 3 4 5 6 range
A 1063.2
(3)
P 		871.4
(1.2)
P 		423.3
(-3)
P 		449.2
(-2.8)
P 		543.3
(-1.9)
P 		491.4
(-2.4)
P 		640
B 1104.3
(3)
P 		878.4
(1.1)
P 		615.8
(-1.2)
P 		405.5
(-3)
P 		495.3
(-2.2)
P 		569.6
(-1.6)
P 		699
C 1196
(3)
P 		880.4
(0.6)
P 		498.5
(-2.3)
P 		408.7
(-3)
P 		598.8
(-1.6)
P 		639.4
(-1.2)
P 		787
avr 1121.2
(3) 		876.7
(0.9) 		512.5
(-2.2) 		421.1
(-3) 		545.8
(-1.9) 		566.8
(-1.8) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 435.4
(3)
P 		178.8
(-1.6)
P 		102.1
(-3)
P 		148.3
(-2.2)
P 		333
B 439
(3)
P 		153.2
(-2.2)
P 		108.4
(-3)
P 		217.8
(-1)
P 		331
C 501.2
(3)
P 		181
(-2.6)
P 		167.8
(-2.9)
P 		159.9
(-3)
P 		341
avr 458.5
(3) 		171
(-2.2) 		126.1
(-3) 		175.3
(-2.1) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 196
(-0.1)
P 		309.9
(3)
P 		92.2
(-3)
P 		113.9
(-2.4)
P 		163.9
(-1)
P 		119.6
(-2.2)
P 		218
B 384.3
(3)
P 		292.4
(1)
P 		149.5
(-2.1)
P 		107.4
(-3)
P 		201.2
(-1)
P 		212.4
(-0.7)
P 		277
C 443.3
(3)
P 		268.7
(0.1)
P 		126.9
(-2.3)
P 		82.2
(-3)
P 		193.8
(-1.1)
P 		214.1
(-0.8)
P 		361
avr 341.2
(3) 		290.3
(1.7) 		122.9
(-2.5) 		101.2
(-3) 		186.3
(-0.9) 		182
(-1) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2464
Sequence Type Exemplar sequence
Representative Public ID F07A5.5 NCBI
Target Description F07A5.5 /REP_DB=WormBase Gene ID /WP=CE05558 /GEN=sus-1 /TR=Q19136 /GB=CAA96615.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C2 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059682 NCBI Caenorhabditis elegans SUppressor of Elongation defect family member (sue-1) (sue-1) mRNA, complete cds. 11/11 None
GENEFINDER00000034794 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7368787:7373306:-1 11/11 None
F07A5.5 ENSEMBL cdna:known chromosome:CEL140:I:7368522:7371596:-1 gene:F07A5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034785 8/11 Cross Hyb Matching Probes None
SNAP00000034786 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7368717-7371527(-) 100.0 100.0
Public Domain and Genome References
Gene Title C2 domain
Gene Symbol sue-1
Ensembl F07A5.5
Entrez Gene 184108 Entrez gene
SwissProt Q19136 EMBL-EBI
WormBase CE05558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96615 Hypothetical protein F07A5.5 [Caenorhabditis elegans] ref|NP_492083.1| SUppressor of Elongation defect family member (sue-1) [Caenorhabditis elegans] 1.0E-85
blast CAA96615 Hypothetical protein F07A5.5 [Caenorhabditis elegans] ref|NP_492083.1| SUppressor of Elongation defect family member (sue-1) [Caenorhabditis elegans] 3.0E-85
blast CAE66604 Hypothetical protein CBG11929 [Caenorhabditis briggsae] 6.0E-82
blast CAE66604 Hypothetical protein CBG11929 [Caenorhabditis briggsae] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 9.0E-5
Pfam IPR000008 EMBL-EBI C2 domain 5.9E-13
Pfam IPR000008 EMBL-EBI C2 domain 5.9E-13
Sequence
Target Sequence 
>C. ELEGANS:190129_AT
aaaggtcgacgctctaccgaaatgtggtttaattggtgctcctgacgtttgcgtcaaaat
cacgttgactcaaggagccaagacacagacaaagtcgtcaagagtgataaaaaatacatg
ttctgctgtttacaatgaagctgtcatgttcctctgtggaacatcaaagaatgatctggc
acaaacttcaattgtgatttcggtacatgatgctcaaagaacttgcaccggagatgacac
catcggatgcgcctatctgggtattggagctgttgataaatcagaaattgatcaatggaa
aggaacaacagagcatcttggaaaagagtataagggaaaccatacactaaaagctccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGTCGACGCTCTACCGAAATGT 56 1 138 Antisense
TTAATTGGTGCTCCTGACGTTTGCG 433 685 166 Antisense
GACTCAAGGAGCCAAGACACAGACA 420 373 204 Antisense
AAATACATGTTCTGCTGTTTACAAT 387 117 249 Antisense
AATGAAGCTGTCATGTTCCTCTGTG 196 165 271 Antisense
GAATGATCTGGCACAAACTTCAATT 646 331 306 Antisense
GTGATTTCGGTACATGATGCTCAAA 467 483 331 Antisense
GAACTTGCACCGGAGATGACACCAT 372 349 356 Antisense
AGATGACACCATCGGATGCGCCTAT 602 67 369 Antisense
GATGCGCCTATCTGGGTATTGGAGC 207 415 383 Antisense
GAAACCATACACTAAAAGCTCCAAT 446 359 473 Antisense
Sequence Source Affymetrix Proprietary Database