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[190126_at]

Description T12A7.1 /REP_DB=WormBase Gene ID /WP=CE27445 /TR=Q22422 /GB=CAA98141.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C2 domain (2 domains)
Cluster 6grp_total > 20      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 46.4
(-3)
A 		51
(-2.6)
A 		76.5
(-0.2)
A 		111.1
(3)
P 		65
B 70
(2.8)
A 		7.8
(-3)
A 		15.8
(-2.3)
A 		72.1
(3)
A 		64
C 63.7
(-0.2)
A 		12.7
(-3)
A 		26.6
(-2.3)
A 		123.9
(3)
P 		111
avr 60
(-0.2) 		23.8
(-3) 		39.6
(-1.8) 		102.4
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 15.8
(-3)
A 		63.1
(2.7)
A 		28.4
(-1.5)
A 		65.9
(3)
A 		31.3
(-1.1)
A 		16.1
(-3)
A 		50
B 20.7
(-2.2)
A 		36.2
(0)
A 		57.6
(3)
A 		49.2
(1.8)
A 		54.5
(2.6)
A 		14.7
(-3)
A 		43
C 41.1
(-0.5)
A 		83.7
(3)
A 		39.1
(-0.7)
A 		10.7
(-3)
A 		32.9
(-1.2)
A 		12.8
(-2.8)
A 		73
avr 25.9
(-1.5) 		61
(3) 		41.7
(0.5) 		41.9
(0.5) 		39.6
(0.2) 		14.5
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.9
(0.9)
A 		11.1
(-3)
A 		20
(3)
A 		16.3
(0.5)
P 		9
B 22.3
(3)
A 		1.9
(-3)
A 		3.7
(-2.5)
A 		15.4
(1)
A 		20
C 21.1
(3)
A 		3.6
(-3)
A 		9.3
(-1)
A 		20.9
(2.9)
P 		18
avr 20.1
(3) 		5.5
(-3) 		11
(-0.7) 		17.5
(1.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.9
(-3)
A 		22.4
(3)
A 		6.2
(-2)
A 		16.7
(1.2)
A 		9.5
(-1)
A 		3.9
(-2.7)
A 		20
B 7.2
(-2.4)
A 		12
(-0.7)
A 		14
(0.1)
A 		13
(-0.3)
A 		22.1
(3)
A 		5.5
(-3)
A 		17
C 15.3
(0.4)
A 		25.5
(3)
A 		9.9
(-1)
A 		2.2
(-3)
A 		10.6
(-0.8)
A 		4.3
(-2.5)
A 		23
avr 8.5
(-1.5) 		20
(3) 		10
(-0.9) 		10.6
(-0.7) 		14.1
(0.7) 		4.6
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10341
Sequence Type Exemplar sequence
Representative Public ID T12A7.1 NCBI
Target Description T12A7.1 /REP_DB=WormBase Gene ID /WP=CE27445 /TR=Q22422 /GB=CAA98141.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C2 domain (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069826 NCBI Caenorhabditis elegans T12A7.7 (T12A7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000004580 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11751420:11752915:1 11/11 None
T12A7.7 ENSEMBL cdna:known chromosome:CEL140:IV:11751420:11752839:1 gene:T12A7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004570 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11745651-11752845(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A7.7
Entrez Gene 188438 Entrez gene
SwissProt Q95ZN9 EMBL-EBI
WormBase CE27447 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC42339 Hypothetical protein T12A7.7 [Caenorhabditis elegans] ref|NP_502227.1| T12A7.7 [Caenorhabditis elegans] 1.0E-177
blast CAC42339 Hypothetical protein T12A7.7 [Caenorhabditis elegans] ref|NP_502227.1| T12A7.7 [Caenorhabditis elegans] 1.0E-149
blast CAB03479 Hypothetical protein W05H5.4 [Caenorhabditis elegans] ref|NP_496647.1| Serpentine Receptor, class H family member (srh-27) [Caenorhabditis elegans] 1.0E-114
blast CAE62121 Hypothetical protein CBG06161 [Caenorhabditis briggsae] 1.0E-109
blast CAB03479 Hypothetical protein W05H5.4 [Caenorhabditis elegans] ref|NP_496647.1| Serpentine Receptor, class H family member (srh-27) [Caenorhabditis elegans] 1.0E-105
blast CAE62121 Hypothetical protein CBG06161 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.9E-47
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502227.1 7 52-74,86-108,128-147,186-208,236-258,265-287,302-321
T12A7.7 7 52-74,86-108,128-147,186-208,236-258,265-287,302-321
GENEFINDER00000004580 6 56-78,90-112,132-151,190-212,241-263,270-292
Sequence
Target Sequence 
>C. ELEGANS:190126_AT
gttgcagctgatgttctgaacgcgttcttttacttaacatcggttctttgtacatgtgcc
attggatatatgaacgaggatcaaaagtttgcaaagaatagaataattgagaaatttcta
gttccgcctccaaacctttgggatgacaactatgtgacaactgatcgagaaaacccaaat
ctcaagtattatatgtatgtaacggttgtagaaataataatactttctatcaacgtcatt
gccgttcctgctattgcttttcattttctatccaaaaatcgaactgaaaaatcggaaaaa
cttgccgaagctcaccgacgaaccttacaagctttgatatttcagatgacaatccacttc
attttccacttggtccccctagtttgtttcacctgggcaattattttcagaacaaataat
gttatatttttaacgcttggactttttatctgggcgttgcatggagcagcgtgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCAGCTGATGTTCTGAACGCGT 232 439 2899 Antisense
GAACGCGTTCTTTTACTTAACATCG 511 347 2916 Antisense
ATCGGTTCTTTGTACATGTGCCATT 404 35 2937 Antisense
TGAGAAATTTCTAGTTCCGCCTCCA 286 569 3006 Antisense
TTCCGCCTCCAAACCTTTGGGATGA 95 689 3020 Antisense
GTTCCTGCTATTGCTTTTCATTTTC 605 441 3142 Antisense
AGCTCACCGACGAACCTTACAAGCT 82 81 3207 Antisense
CAATCCACTTCATTTTCCACTTGGT 532 181 3248 Antisense
CCTAGTTTGTTTCACCTGGGCAATT 276 195 3276 Antisense
TTGGACTTTTTATCTGGGCGTTGCA 15 675 3335 Antisense
GGGCGTTGCATGGAGCAGCGTGTAC 63 493 3350 Antisense
Sequence Source Affymetrix Proprietary Database